BtaEX0018592 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020455 | ITPR1
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 1 (ITPR1), mRNA. [Source:RefSeq mRNA;Acc:NM_174841]
Coordinates
chr22:21662228-21674979:-
Coord C1 exon
chr22:21674787-21674979
Coord A exon
chr22:21669249-21669371
Coord C2 exon
chr22:21662228-21662403
Length
123 bp
Sequences
Splice sites
3' ss Seq
TTCCGTCTTTGTTTTCACAGCCC
3' ss Score
10.06
5' ss Seq
GAGGTACTG
5' ss Score
7.67
Exon sequences
Seq C1 exon
ATTGTCAGGTTAGACCGAACCATGGAGCAGATTGTCTTCCCCGTGCCCAGTATATGTGAATTCCTAACCAAAGAGTCAAAACTACGGATATACTACACCACAGAGAGGGACGAGCAGGGCAGCAAGATCAACGACTTCTTCCTGCGGTCCGAGGACCTCTTCAATGAGATGAATTGGCAGAAGAAGCTCAGAG
Seq A exon
CCCAGCCCGTCCTGTACTGGTGCGCCCGCAACATGTCTTTCTGGAGTAGCATTTCATTCAACCTGGCCGTCCTGATGAACCTGCTTGTGGCGTTTTTCTACCCTTTTAAAGGAGTCCGAGGAG
Seq C2 exon
GGACCCTGGAACCGCACTGGTCGGGACTGCTGTGGACGGCCATGCTCATCTCTCTGGCCATCGTCATCGCCCTCCCCAAGCCCCATGGCATCCGGGCCTTAATCGCTTCCACGATTCTCCGGTTGATATTTTCCGTCGGGCTACAACCCACGCTGTTTCTTTTGGGAGCTTTCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020455-'60-64,'60-61,62-64
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0052026=Ion_trans=PU(10.9=47.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACTACACCACAGAGAGGGACG
R:
GGTTGTAGCCCGACGGAAAAT
Band lengths:
250-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development