MmuEX6005991 @ mm9
Exon Skipping
Gene
ENSMUSG00000030102 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor 1 [Source:MGI Symbol;Acc:MGI:96623]
Coordinates
chr6:108443695-108456046:+
Coord C1 exon
chr6:108443695-108443887
Coord A exon
chr6:108449102-108449224
Coord C2 exon
chr6:108455871-108456046
Length
123 bp
Sequences
Splice sites
3' ss Seq
GGCTTCATCTGTTTCCACAGCCC
3' ss Score
8.46
5' ss Seq
GAGGTAACC
5' ss Score
8.55
Exon sequences
Seq C1 exon
ATTGTCAGACTGGACCGGACAATGGAACAGATCGTCTTCCCTGTGCCCAGCATCTGTGAATTCCTGACTAAGGAATCGAAACTTCGAATATATTACACCACAGAGCGGGATGAGCAAGGTAGCAAGATCAATGACTTCTTCCTGCGCTCCGAGGACCTCTTTAACGAGATGAACTGGCAGAAGAAACTTCGAG
Seq A exon
CCCAGCCTGTCTTGTACTGGTGTGCCCGAAACATGTCTTTCTGGAGCAGCATCTCCTTCAACCTGGCCGTCCTGATGAACCTGCTGGTGGCGTTTTTCTATCCATTTAAAGGAGTAAGGGGAG
Seq C2 exon
GAACACTAGAGCCACACTGGTCAGGCCTTCTGTGGACAGCCATGCTCATCTCTCTGGCCATTGTCATTGCTCTGCCCAAGCCCCACGGCATCCGGGCCTTAATTGCTTCTACAATCCTACGACTGATATTTTCAGTTGGGTTGCAGCCCACACTGTTTCTGCTGGGAGCTTTCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030102-'64-65,'64-64,66-65=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0052026=Ion_trans=PU(10.9=47.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCAGACTGGACCGGACAAT
R:
GAGATGAGCATGGCTGTCCAC
Band lengths:
243-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: