GgaEX0012013 @ galGal4
Exon Skipping
Gene
ENSGALG00000008294 | ITPR1
Description
inositol 1,4,5-triphosphate receptor, type 1 [Source:RefSeq peptide;Acc:NP_001167530]
Coordinates
chr12:18505869-18512253:+
Coord C1 exon
chr12:18505869-18506061
Coord A exon
chr12:18509650-18509772
Coord C2 exon
chr12:18512078-18512253
Length
123 bp
Sequences
Splice sites
3' ss Seq
TGATGGTGGTTGTTTTGCAGCTC
3' ss Score
7.43
5' ss Seq
GAGGTATCA
5' ss Score
6.35
Exon sequences
Seq C1 exon
ATTGTCAGGTCAGACCGTACGATGGAGCAGATCGTCTTCCCTGTGCCCAATATATGTGAATTCCTCACCAAGGAGTCCAAGCTGCGGATATATTACACCACGGAGAGGGATGAACAAGGCAGTAAAATCAATGATTTCTTCATGAAATCAGAAGACCTCTTTAATGAGATGAACTGGCAAAAGAAATTACGAG
Seq A exon
CTCAGCCTTTCCTGTACTGGTGTGCTCGCAACATGTCCTTCTGGAGCAGTATTTCCTTTAACCTGGCTGTCCTCATGAACCTGCTGGTAGCATTTTTCTACCCATTCAAAGGAATTCGAGGAG
Seq C2 exon
GTACTTTGGAGCCCCACTTGTCAGGCTTGCTGTGGACAGCTATGCTGATTTCTCTGGCTATAGTCATTGCTCTTCCTAAGCCCCACGGCATCCGAGCCTTAATAGCTTCTACAATATTACGACTAATATTTTCAGTTGGTTTACAACCTACTTTATTTCTTCTGGGTGCATTCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0052026=Ion_trans=PU(10.4=45.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTCTTCCCTGTGCCCAATA
R:
TGGGGCTTAGGAAGAGCAATG
Band lengths:
247-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]