RnoEX0045404 @ rn6
Exon Skipping
Gene
ENSRNOG00000007104 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:RGD Symbol;Acc:2933]
Coordinates
chr4:140524552-140536496:+
Coord C1 exon
chr4:140524552-140524744
Coord A exon
chr4:140530014-140530136
Coord C2 exon
chr4:140536321-140536496
Length
123 bp
Sequences
Splice sites
3' ss Seq
GGCTTCTTCTGTTCCCACAGCCC
3' ss Score
9.61
5' ss Seq
GAGGTAACC
5' ss Score
8.55
Exon sequences
Seq C1 exon
ATTGTCAGACTGGACCGAACTATGGAACAGATTGTCTTCCCTGTGCCCAGCATCTGTGAATTTCTGACTAAGGAATCGAAACTTCGAATATATTACACCACAGAGAGGGATGAGCAAGGCAGCAAGATCAATGACTTCTTCCTGCGCTCCGAGGACCTCTTTAATGAGATGAACTGGCAGAAGAAACTTCGAG
Seq A exon
CCCAGCCTGTCTTGTACTGGTGCGCCCGAAACATGTCTTTCTGGAGCAGCATCTCCTTCAACCTGGCCGTCCTGATGAACCTGCTGGTGGCGTTTTTCTACCCATTTAAAGGAGTGAGAGGAG
Seq C2 exon
GAACACTAGAGCCGCACTGGTCCGGCCTCCTGTGGACAGCCATGCTCATCTCTCTGGCAATTGTCATTGCGCTGCCCAAGCCCCATGGCATCCGGGCCTTAATTGCTTCTACAATCCTACGACTGATATTTTCAGTTGGATTACAGCCCACACTGTTTCTGCTGGGAGCTTTCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007104-'86-89,'86-86,88-89
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0052026=Ion_trans=PU(10.9=47.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGAGCAAGGCAGCAAGAT
R:
CTCCCAGCAGAAACAGTGTGG
Band lengths:
254-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]