DreEX0040332 @ danRer10
Exon Skipping
Gene
ENSDARG00000074149 | itpr1b
Description
inositol 1,4,5-trisphosphate receptor, type 1b [Source:ZFIN;Acc:ZDB-GENE-070604-2]
Coordinates
chr11:35555540-35571356:-
Coord C1 exon
chr11:35571125-35571356
Coord A exon
chr11:35567503-35567631
Coord C2 exon
chr11:35555540-35555715
Length
129 bp
Sequences
Splice sites
3' ss Seq
TAACTTGCTGCCTCCTCCAGCTC
3' ss Score
7.73
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
ATCGTCCGCCTGGATCGCACAATGGAACAGATTGTATTTCCCGTCCCCAACATTTGCGAATTCCTAACCCAGGAGTCCAAGCTTCGCGTCTATTACACCACAGAACGCGACGAGCAGGGCAGCAAGATCAATGACTTCTTCTTGCGCTCTGAAGACCTTTTTAATGAGATGAACTGGCAGAAGAAGCTGCGAGGTACTCAAGAGGCCACTGGTAACGCAAACTCCGTGCCTT
Seq A exon
CTCAGCCCATCCTGTACTGGTGTTCCCGTAACATGTCCTTTTGGAGCAGCATTTCCTTTAACCTCGCCGTCCTCATGAACCTCTTGGTAGCATTCTTCTATCCACTGGAAGGTGGAGGTGTCCGTGGAG
Seq C2 exon
GCACTCTGGAGCCGCATCTCTCCGCTCTCCTCTGGGCGGCCATGCTGGTTTCTCTGGCTATAGTGATTGTACTGCCTCAGCCGCACGGCATTCGGGCCCTCATCGCTTCCACCATCTTACGCCTCATCTTTTCGGTCGGCCTGGAGCCCACCCTCTTCCTCCTTGGGGCTTTTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074149-'61-60,'61-57,62-60
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.047 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0052026=Ion_trans=PU(10.3=44.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAGGGCAGCAAGATCAAT
R:
GAGGCGTAAGATGGTGGAAGC
Band lengths:
246-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]