GgaEX6002995 @ galGal3
Exon Skipping
Gene
ENSGALG00000014071 | ITPR2
Description
NA
Coordinates
chr1:69895139-69897653:-
Coord C1 exon
chr1:69897466-69897653
Coord A exon
chr1:69895968-69896151
Coord C2 exon
chr1:69895139-69895395
Length
184 bp
Sequences
Splice sites
3' ss Seq
ACTGTCTTTTTTCCTTGCAGTAT
3' ss Score
11.36
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
GTGGATTTGTAGGACAAGACTCAGATAAGTCTGGAGTATCCATGTTTGATATTCAGTGCCTTCTGGATAAAGAAGGTGCATCAGAACTTGTCATAGACGTTATAGTCAGCACCAAAAATGACAGAATTTTCTCAGAAGGCATTTTGCTTGGTATTGCGTTGCTTGAAGGTGGAAATGCACAAACACAG
Seq A exon
TATTCAACTTACCAGCAACTGAAGGAGCAAAAAAAGTCAGAAAAATTCTTTAAAGTCCTGTATGACCGTATGAAGGCTGCTCAGCAAGAGATACGGTCAACAGTGACAGTGAACACTATTGATTTGGGGAGCAAAAAGAAAGATGATGATAGTGACCTAACCATATCTGTACCCAAAAAGAGAG
Seq C2 exon
TGAAGGATTCAACACTGCACCTGAAAGAGGGTATGAAAGTTCAGTTAACAGAAGCATCTTCTGCAACATCCAAGGCTTACTCTGTATATAGAAGAGAAATGGACCCAGAAATAGATCTTATGGGCTCAGGAACAGATGCTGCAAACGCAGAGGAGAAGTCCACAGAAGAAGCAGTAATGAGTCCTGCTATTGCAATCATGCAGCCAATACTGAGATTTCTCCAGCTGCTATGCGAGAACCACAACCGAGAGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014071-'44-50,'44-49,45-50=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.145 C2=0.198
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF084546=RIH_assoc=PU(24.2=33.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGGAAATGCACAAACACAG
R:
CTCGCATAGCAGCTGGAGAAA
Band lengths:
258-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]