DreEX0040431 @ danRer10
Exon Skipping
Gene
ENSDARG00000033707 | jade1
Description
jade family PHD finger 1 [Source:ZFIN;Acc:ZDB-GENE-030131-5648]
Coordinates
chr17:26814728-26822745:+
Coord C1 exon
chr17:26814728-26814939
Coord A exon
chr17:26822352-26822519
Coord C2 exon
chr17:26822629-26822745
Length
168 bp
Sequences
Splice sites
3' ss Seq
AACCATGTATCTCTCCACAGGCG
3' ss Score
10.48
5' ss Seq
GAAGTAAGG
5' ss Score
6.38
Exon sequences
Seq C1 exon
GCATGCAACCCCTGGATGAGCTTACAATGGAGCGGGTCATGGAGGAGTTTGAGCGCCGTTGCTATGACAACATGAGCCACGCCATGGAAACAGAGGAGGGGCTTGGTATCGAGTATGATGAGGATGTGGTCTGCGATGTCTGTCAGTCTCCTGACGGCGAGGACGGCAACGAGATGGTGTTCTGTGACAAGTGCAACATCTGCGTGCATCAG
Seq A exon
GCGTGTTATGGTATACTGAAGGTCCCTGAGGGCAGCTGGCTTTGCCGTACCTGTGCGCTGGGTATTTTTCCCAAATGCCACCTGTGCCCTAAAAAAGGCGGAGCCATGAAACCCACCCGCAGTGGCACCAAGTGGGTCCACGTCAGCTGTGCCCTCTGGATACCTGAA
Seq C2 exon
GTAAGCATTGGTAACCCTGAGAAGATGGAGCCTATCACTAATGTGTCTCATATACCCAGCAACAGATGGGCTCTAATATGCTGCCTGTGTAAAGAGAAGACAGGAGCTTGTATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000033707-'14-10,'14-9,16-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.051
Domain overlap (PFAM):
C1:
PF105134=EPL1=PD(12.9=26.8),PF0013017=C1_1=PU(72.0=50.7),PF138311=PHD_2=PU(42.9=21.1)
A:
PF0013017=C1_1=PD(24.0=21.4),PF138311=PHD_2=PD(51.4=32.1),PF138321=zf-HC5HC2H_2=PU(28.3=57.1)
C2:
PF138321=zf-HC5HC2H_2=FE(33.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAACCCCTGGATGAGCTTA
R:
AGGCTCCATCTTCTCAGGGTT
Band lengths:
242-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]