RnoEX0045528 @ rn6
Exon Skipping
Gene
ENSRNOG00000014066 | Jade1
Description
jade family PHD finger 1 [Source:RGD Symbol;Acc:1306920]
Coordinates
chr2:128493984-128498493:+
Coord C1 exon
chr2:128493984-128494195
Coord A exon
chr2:128497260-128497406
Coord C2 exon
chr2:128498377-128498493
Length
147 bp
Sequences
Splice sites
3' ss Seq
CTTGCTATGGAATCCTTAAGGTG
3' ss Score
2.74
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GGATGCCGGAACTGGATGAGTACACCATGGAAAGGGTCTTGGAGGAGTTTGAACAGCGATGCTATGACAATATGAATCATGCCATAGAGACAGAAGAGGGCTTGGGGATCGAATATGATGAAGACGTTGTCTGCGATGTCTGCCAGTCACCTGATGGCGAGGACGGCAACGAGATGGTATTCTGTGACAAGTGTAACATCTGTGTGCACCAG
Seq A exon
GTGCCAGAGGGCAGTTGGCTATGCCGTACATGTGCCCTGGGAGTTCAGCCAAAATGTTTGCTGTGTCCCAAGAAAGGCGGAGCTATGAAGCCTACCCGCAGTGGAACCAAGTGGGTCCATGTCAGCTGTGCCCTGTGGATCCCTGAG
Seq C2 exon
GTAAGCATTGGCAGCCCTGAGAAGATGGAGCCCATCACAAAAGTGTCCCACATTCCGAGCAGTCGATGGGCGCTTGTGTGCAGCCTCTGCAATGAGAAATTTGGGGCCTCCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014066-'22-10,'22-9,23-10
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.077
Domain overlap (PFAM):
C1:
PF105134=EPL1=PD(12.8=26.8),PF0013017=C1_1=PU(75.9=62.0),PF138311=PHD_2=PU(42.9=21.1)
A:
PF0013017=C1_1=PD(20.7=21.4),PF138311=PHD_2=PD(51.4=32.1),PF138321=zf-HC5HC2H_2=PU(29.4=57.1)
C2:
PF138321=zf-HC5HC2H_2=FE(34.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCGGAACTGGATGAGTACA
R:
ATGGGCTCCATCTTCTCAGGG
Band lengths:
244-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]