MmuEX0034728 @ mm9
Exon Skipping
Gene
ENSMUSG00000025764 | Phf17
Description
PHD finger protein 17 [Source:MGI Symbol;Acc:MGI:1925835]
Coordinates
chr3:41400537-41405405:+
Coord C1 exon
chr3:41400537-41400748
Coord A exon
chr3:41403944-41404111
Coord C2 exon
chr3:41405289-41405405
Length
168 bp
Sequences
Splice sites
3' ss Seq
ACAAAGTTGTGGCCTTACAGGCT
3' ss Score
5.07
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
GGATGCCGGAGCTGGACGAGTACACCATGGAAAGGGTCTTGGAGGAATTCGAACAGCGATGCTATGACAATATGAATCATGCCATAGAGACAGAAGAGGGCTTGGGGATTGAATACGACGAAGACGTTGTCTGCGATGTCTGCCAGTCACCTGATGGCGAGGACGGCAACGAGATGGTGTTCTGTGACAAGTGTAACATCTGTGTGCACCAG
Seq A exon
GCTTGCTATGGGATCCTCAAGGTGCCAGAGGGCAGTTGGCTATGTCGTACATGTGCCCTGGGAGTTCAGCCAAAATGTTTGCTGTGTCCCAAGAAAGGCGGAGCTATGAAGCCGACCCGCAGCGGAACCAAGTGGGTCCACGTCAGCTGTGCCCTGTGGATCCCTGAG
Seq C2 exon
GTAAGCATTGGCAGCCCTGAGAAGATGGAGCCCATCACAAAAGTGTCTCACATTCCCAGCAGCCGGTGGGCGCTTGTGTGCAGCCTCTGCAATGAGAAATTCGGGGCCTCCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025764-'15-18,'15-14,16-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.000 C2=0.077
Domain overlap (PFAM):
C1:
PF105134=EPL1=PD(12.5=26.8),PF0013017=C1_1=PU(75.9=62.0),PF138311=PHD_2=PU(42.9=21.1)
A:
PF0013017=C1_1=PD(20.7=21.4),PF138311=PHD_2=PD(51.4=32.1),PF138321=zf-HC5HC2H_2=PU(28.3=57.1)
C2:
PF138321=zf-HC5HC2H_2=FE(33.6=100),PF087466=zf-RING-like=PU(33.3=30.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGACAGAAGAGGGCTTGGG
R:
TGTATGGAGGCCCCGAATTTC
Band lengths:
243-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: