DreEX0041121 @ danRer10
Exon Skipping
Gene
ENSDARG00000078133 | kdm2ab
Description
lysine (K)-specific demethylase 2Ab [Source:ZFIN;Acc:ZDB-GENE-101007-5]
Coordinates
chr14:21457276-21460022:+
Coord C1 exon
chr14:21457276-21457459
Coord A exon
chr14:21458245-21458283
Coord C2 exon
chr14:21459884-21460022
Length
39 bp
Sequences
Splice sites
3' ss Seq
TGTGTATCTTCATTTTTCAGAGT
3' ss Score
10.31
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
ATCATGACAATCTGAAAATGGCGGATGAAAGCGGATTGATTTAACTTTATCGAACAAAAATAAGAATATCAAGTGAAGAACGACACCATCGCACAGGATGAGTTTGCAGCTCCGCGGGGATTTTTAAGCATCCTCCTACACAGCGGCTCCACACTATCGGCGGAAAGCGAAAGTTGAAGGCTAG
Seq A exon
AGTATGTCAGAGGCTAAATCCCGTTATAGCAAACGACTG
Seq C2 exon
CGGTCTGGCACACGACGGCGGTACCAGGATGATGGCATTTCAGATGATGAGATTGAAGGGAAGAGGTCTTTTGACCTCGAAGAGAAACTCCAGAGTGACCGATATAACTCTAATTTGGTCAAAATTATGGATGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078133_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.278 C2=0.298
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCCGCGGGGATTTTTAAG
R:
AATGCCATCATCCTGGTACCG
Band lengths:
116-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]