MmuEX0025275 @ mm10
Exon Skipping
Gene
ENSMUSG00000054611 | Kdm2a
Description
lysine (K)-specific demethylase 2A [Source:MGI Symbol;Acc:MGI:1354736]
Coordinates
chr19:4362776-4397077:-
Coord C1 exon
chr19:4396311-4397077
Coord A exon
chr19:4394792-4394892
Coord C2 exon
chr19:4362776-4362914
Length
101 bp
Sequences
Splice sites
3' ss Seq
TTGTAAATTTGGATCCTTAGGAA
3' ss Score
6.38
5' ss Seq
TTGGTTAGT
5' ss Score
4.82
Exon sequences
Seq C1 exon
AGCCCCGGCTCAGGGGACGACGCAAAGGCAGCCGAAGGCCCCCGGTCAGGGCGCTTCGCTGCTCCCGCCCTCTCCGCCCCCCGGGGCCGGGGCCCGCGTTCCGGGGGGCCGGGCGGCGCGGGGAGCGTCGGCCGGGCGGGTCTCAGCTGATCGGCCGCGGTTCCTGGGCTTCGGTAGCGGCTGTGGCCGGCTGAGGGTACCGAGAGGAGGGTGTTTCCCGCGGCCCGGTTGACCCGGGTCTCGGGCTGGGGCTGCTGACCGCCAGCTTGGGGGAGTAGCCGAGTGGTCTTGCTTCCCTGACGCCTCGGACGCGGAGTCTGTAAAAGCCAGAAGAGGAGGTTTGATTCAGTAACTGTTTCCTCTTTTCCGGGTCGCTCTGACCCTTCTCTGGATACTGGGTTAATACACAGAAATACCGAAGACGACGTTTGGGATTTTATTTTGTCTGTGTTTGGAATTTTACTTCTCTCTTGGACAAGAACTCAAGAACAAAATCCTCG
Seq A exon
GAAGAGGAAGGCATCCCTGGAGTGGTTTCTTTACTGTACTTCCATCAGAAGAGTGAGAGATGGAACCTGAAGAAGAAAGGATTCGGTACAGCCAGAGATTG
Seq C2 exon
CGTGGTACCATGCGTCGTCGCTATGAAGATGATGGCATTTCAGATGATGAAATTGAAGGGAAAAGAACTTTTGACTTGGAAGAGAAGCTCCAAACCAACAAATATAATGCCAATTTTGTTACTTTTATGGAGGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054611-'2-15,'2-6,3-15
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.893 C2=0.231
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGGTCTTGCTTCCCTGAC
R:
TGCCATCATCTTCATAGCGACG
Band lengths:
257-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types