RnoEX0046410 @ rn6
Exon Skipping
Gene
ENSRNOG00000019145 | Kdm2a
Description
lysine demethylase 2A [Source:RGD Symbol;Acc:1309419]
Coordinates
chr1:219608547-219640294:-
Coord C1 exon
chr1:219639961-219640294
Coord A exon
chr1:219638434-219638528
Coord C2 exon
chr1:219608547-219608685
Length
95 bp
Sequences
Splice sites
3' ss Seq
TTGTGCATTTGGATCCTTAGGAA
3' ss Score
7.1
5' ss Seq
TTGGTTAGT
5' ss Score
4.82
Exon sequences
Seq C1 exon
GGGCTTCGGAAGCGGCTGTGACCGTCTGAGGGTACCGAGAAGAGGGTGTTTCCCGCGGCCGGGTTGGCCCGGGTTTCGGGCTGGGGCTGCTGACCGCCAGCTTGGGGGAGTAGCCGAGTGGTCTTGCTATCCTGACGCCTCAGACGCGGAGTCTGTAAAGCCAGAAGAGGAGGTTTGGTTCAGTCACTGTTTCCTCTTTTCCGGGTCGCTCTGACCCTTCTCTGGATACTGGGTTAATACACAGAAATACCGAAGACGACGTTTGGGATTTTATTTTTTCTCTGTTTGGAATTTTACTTCTCTCTTGGACAAGAACTCAAGAACAAAATCCTCG
Seq A exon
GAAGAGGAAGGCATCCGGGAGTGGTTTCTGTACTTCCATCAGAAGAGTAAGAGATGGAACCTGAAGAAGAAAGGATTCGGTACAGCCAGAGATTG
Seq C2 exon
CGTGGTACCATGCGACGTCGCTATGAAGATGATGGCATTTCAGATGATGAAATTGAAGGGAAAAGAACTTTTGACTTGGAAGAGAAGCTCCATACCAACAAATATAATGCCAATTTTGTTACTTTTATGGAGGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019145-'5-2,'5-0,6-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.929 C2=0.213
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTCCTCTTTTCCGGGTCG
R:
GCCATCATCTTCATAGCGACGT
Band lengths:
183-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]