DreEX0043447 @ danRer10
Exon Skipping
Gene
ENSDARG00000039563 | loxl3b
Description
lysyl oxidase-like 3b [Source:ZFIN;Acc:ZDB-GENE-030131-8210]
Coordinates
chr13:15134623-15147046:+
Coord C1 exon
chr13:15134623-15134723
Coord A exon
chr13:15145018-15145092
Coord C2 exon
chr13:15146839-15147046
Length
75 bp
Sequences
Splice sites
3' ss Seq
AATGGATGTTTGCATTACAGGCA
3' ss Score
6.37
5' ss Seq
AAGGTAACC
5' ss Score
9.24
Exon sequences
Seq C1 exon
GATTGATATATATATATATATGCTTGACCCAATCTCTGTGTTTTCAACAGGCATCTCAGAAAGAGATCTACTGAACCAAAAGCTAAAGTTAAAGCAACCAG
Seq A exon
GCAGGAGTCCAAAATTAAGGCTATCACTAAAACTAGCTCTAAGCCTAAACGGGGCAAATCAGCTGCGGCTAAAAG
Seq C2 exon
GCTGTATGCTGAGCGGCAGAAGAACTTTTTTCTGGTTCATTCAGTGGCTTGTTTAGGCACAGAAGTGCACTTGGCCGCATGTCCTCTGGAGTTTAACTATGGCAATGCCACCGAGTCATGTCCTGGAGGAATGCCTGCTGTGGTCAGCTGTGTGCCTGGACCACTGTACACACAGAGCCCTACTATGAAGAAAAAACTCAAAATGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000039563-'8-5,'8-4,9-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.278 A=0.500 C2=0.111
Domain overlap (PFAM):
C1:
PF0053013=SRCR=FE(14.2=100)
A:
PF0053013=SRCR=FE(19.5=100)
C2:
PF0053013=SRCR=PD(49.5=72.9)
Main Inclusion Isoform:
ENSDART00000129314fB3614
Main Skipping Isoform:
ENSDART00000129314fB3615
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTGACCCAATCTCTGTGT
R:
TAAACTCCAGAGGACATGCGG
Band lengths:
176-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]