DreEX0043448 @ danRer10
Exon Skipping
Gene
ENSDARG00000039563 | loxl3b
Description
lysyl oxidase-like 3b [Source:ZFIN;Acc:ZDB-GENE-030131-8210]
Coordinates
chr13:15109660-15147046:+
Coord C1 exon
chr13:15109660-15109877
Coord A exon
chr13:15134673-15134723
Coord C2 exon
chr13:15146839-15147046
Length
51 bp
Sequences
Splice sites
3' ss Seq
AATCTCTGTGTTTTCAACAGGCA
3' ss Score
10.45
5' ss Seq
CAGGTATCA
5' ss Score
7.33
Exon sequences
Seq C1 exon
GTGCAGGTGGACGAGAACAGGGTGGAGGAGGTGCGTTTGCGGCCCGTCTTTACTACGGCTACTAAGCGGATGCCGGTCACCGAAGGAGTAGTGGAGGTTAAGAATAAGGACGGATGGGCTCAGATCTGTGATATTGGCTGGACACCCAAAAATACACATGTGGTTTGTGGCATGATGGGATTCCCCCATGAGAAGAAGGTCAATAAGAACTTCTACAA
Seq A exon
GCATCTCAGAAAGAGATCTACTGAACCAAAAGCTAAAGTTAAAGCAACCAG
Seq C2 exon
GCTGTATGCTGAGCGGCAGAAGAACTTTTTTCTGGTTCATTCAGTGGCTTGTTTAGGCACAGAAGTGCACTTGGCCGCATGTCCTCTGGAGTTTAACTATGGCAATGCCACCGAGTCATGTCCTGGAGGAATGCCTGCTGTGGTCAGCTGTGTGCCTGGACCACTGTACACACAGAGCCCTACTATGAAGAAAAAACTCAAAATGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000039563_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=0.278 C2=0.111
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PU(49.5=69.9)
A:
PF0053013=SRCR=FE(14.2=100)
C2:
PF0053013=SRCR=PD(49.5=72.9)
Main Inclusion Isoform:
ENSDART00000129314fB3615
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGGACGGATGGGCTCAGAT
R:
TTCTTCTGCCGCTCAGCATAC
Band lengths:
138-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]