DreEX0043705 @ danRer10
Exon Skipping
Gene
ENSDARG00000061517 | lrp1bb
Description
low density lipoprotein receptor-related protein 1Bb [Source:ZFIN;Acc:ZDB-GENE-070912-401]
Coordinates
chr9:36690919-36697691:+
Coord C1 exon
chr9:36690919-36691146
Coord A exon
chr9:36696531-36696705
Coord C2 exon
chr9:36697597-36697691
Length
175 bp
Sequences
Splice sites
3' ss Seq
GCGATCTCTGGTACGTGCAGATA
3' ss Score
4.81
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
Exon sequences
Seq C1 exon
CGCTGAAGAAGTTCTTGTTGTACGTGAGGCGGTCAGAGATCCGCGGAGTGGACATCGATAATCCGTACATGAACGTCATGACTGCTTTGACGGTTCCTGACATTGATGACGTGACCGTGGTTGATTATGACGCTCTCGAGGAAAGGATATACTGGGCTGATGTTAAGACCCAAACAATAAAACGTGCCTTCATCAATGGAACAGGCCTTCAGACTGTCATTTCTGGAG
Seq A exon
ATATTCAAAACTGCCGTGGGCTGGCAATAGATTGGCTCTCGAGGAACATGTATTGGCTGAGCTCTGAGAATGAGGAGACGCAGATCAATGTTGCCCGACTAGACGGATCTCTGAAAACCTCAGTCATCCACGGGATTGATAAACCAAAGTGTCTGACTGTGCATCCAGCCAAAGG
Seq C2 exon
AAAAATCTACTGGACCGATGGCAATACAATAAACGTAGCCAACATGGATGGAAGCAACAGGAAGGTTCTTCATCAGAACCAGAAGGAACCAGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061517-'27-29,'27-28,28-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.188
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=PU(68.3=36.8)
A:
PF0005812=Ldl_recept_b=PD(26.8=18.6),PF0005812=Ldl_recept_b=WD(100=71.2),PF0005812=Ldl_recept_b=PU(0.1=0.0)
C2:
PF0005812=Ldl_recept_b=PU(79.5=96.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCGGAGTGGACATCGATAAT
R:
TTGCTTCCATCCATGTTGGCT
Band lengths:
244-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]