GgaEX0018752 @ galGal3
Exon Skipping
Gene
ENSGALG00000012407 | LRP1B
Description
NA
Coordinates
chr7:33616428-33619400:-
Coord C1 exon
chr7:33619173-33619400
Coord A exon
chr7:33616817-33616991
Coord C2 exon
chr7:33616428-33616522
Length
175 bp
Sequences
Splice sites
3' ss Seq
ATTGCTGTCAATTTTTGCAGATA
3' ss Score
8.76
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
AAAGGAAGAAATTTCTTCTTTATGCAAGACGTTCAGAAATAAGAGGAGTGGACATAGACAACCCCTACTTCAACTTCATTACAGCCTTCACTGTTCCTGACATTGATGATGTGACGGTCATAGATTTTGATGCTGTTGAGGAGCGGTTATATTGGACTGATGTGAAAACACAAACCATCAAGCGTGCCTTCATTAACGGCACTGGTTTAGAAACTATTATTTCAAGAG
Seq A exon
ATATTCAGAGTATCAGAGGTCTTGCAGTGGATTGGATATCACGTAATTTATACTGGATTAGCTCAGAATTTGATGAAACGCAAATTAATGTGGCACATTTAGATGGTTCCTTAAAAACTTCAATCATCCATGGAATTGATAAACCCCAGTGTCTTGCAGTTCACCCAGTAAAAGG
Seq C2 exon
TAAGCTCTATTGGACTGATGGAAACACAATTAACATGGCTAATATGGATGGCAGCAACAGCAAAATTCTCTTTCAGAATCAAAAAGATCCTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012407-'46-54,'46-53,47-54
Average complexity
S
Mappability confidence:
88%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=PU(70.7=37.7)
A:
PF0005812=Ldl_recept_b=PD(26.8=18.6),PF0005812=Ldl_recept_b=WD(100=71.2),PF0005812=Ldl_recept_b=PU(0.1=0.0)
C2:
PF0005812=Ldl_recept_b=PU(84.2=97.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTGGACATAGACAACCCCT
R:
TTGCTGTTGCTGCCATCCATA
Band lengths:
247-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]