GgaEX6043157 @ galGal3
Exon Skipping
Gene
ENSGALG00000012407 | LRP1B
Description
NA
Coordinates
chr7:33611519-33616991:-
Coord C1 exon
chr7:33616817-33616991
Coord A exon
chr7:33616428-33616522
Coord C2 exon
chr7:33611519-33611668
Length
95 bp
Sequences
Splice sites
3' ss Seq
AATATGTTTATTTTCTCCAGTAA
3' ss Score
5.49
5' ss Seq
TTGGTAAAT
5' ss Score
4.94
Exon sequences
Seq C1 exon
ATATTCAGAGTATCAGAGGTCTTGCAGTGGATTGGATATCACGTAATTTATACTGGATTAGCTCAGAATTTGATGAAACGCAAATTAATGTGGCACATTTAGATGGTTCCTTAAAAACTTCAATCATCCATGGAATTGATAAACCCCAGTGTCTTGCAGTTCACCCAGTAAAAGG
Seq A exon
TAAGCTCTATTGGACTGATGGAAACACAATTAACATGGCTAATATGGATGGCAGCAACAGCAAAATTCTCTTTCAGAATCAAAAAGATCCTGTTG
Seq C2 exon
GTTTATCAATAGATTATGTGGAGAACAAACTTTACTGGATCAGTTCAGGAAATGGAACCATTAATAGATGCAATCTGGATGGTGGCAATCTTGAAATAATAGACTCAATGAAAGAAGATTTACCGAAAGCCACAGCTTTAACCATAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012407-'47-55,'47-54,48-55=AN
Average complexity
A_S
Mappability confidence:
88%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=PD(26.8=18.6),PF0005812=Ldl_recept_b=WD(100=71.2),PF0005812=Ldl_recept_b=PU(0.1=0.0)
A:
PF0005812=Ldl_recept_b=PU(84.2=97.0)
C2:
PF0005812=Ldl_recept_b=PD(13.2=9.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCCCAGTGTCTTGCAGTTC
R:
GCTGTGGCTTTCGGTAAATCT
Band lengths:
170-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]