DreEX6037442 @ danRer10
Exon Skipping
Gene
ENSDARG00000061517 | lrp1bb
Description
low density lipoprotein receptor-related protein 1Bb [Source:ZFIN;Acc:ZDB-GENE-070912-401]
Coordinates
chr9:36696531-36699090:+
Coord C1 exon
chr9:36696531-36696705
Coord A exon
chr9:36697597-36697691
Coord C2 exon
chr9:36698941-36699090
Length
95 bp
Sequences
Splice sites
3' ss Seq
TTTTATGTTTCATGATCTAGAAA
3' ss Score
7.38
5' ss Seq
TTGGTATGT
5' ss Score
7.12
Exon sequences
Seq C1 exon
ATATTCAAAACTGCCGTGGGCTGGCAATAGATTGGCTCTCGAGGAACATGTATTGGCTGAGCTCTGAGAATGAGGAGACGCAGATCAATGTTGCCCGACTAGACGGATCTCTGAAAACCTCAGTCATCCACGGGATTGATAAACCAAAGTGTCTGACTGTGCATCCAGCCAAAGG
Seq A exon
AAAAATCTACTGGACCGATGGCAATACAATAAACGTAGCCAACATGGATGGAAGCAACAGGAAGGTTCTTCATCAGAACCAGAAGGAACCAGTTG
Seq C2 exon
GACTTTCGATTGACTTTCCAGCTGGGAAAATGTATTGGATCAGTTCCGCTAATGGCACTATCAACAGGTGCAATCTGGACGGCAGTGGCTTTGAGGTCATTGAAAGCATGAAGAGGGACTTAACTAAAGCCACGGCTCTTGCAGTCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061517-'28-30,'28-29,29-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.188 C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=PD(26.8=18.6),PF0005812=Ldl_recept_b=WD(100=71.2),PF0005812=Ldl_recept_b=PU(0.1=0.0)
A:
PF0005812=Ldl_recept_b=PU(79.5=96.9)
C2:
PF0005812=Ldl_recept_b=PD(15.4=12.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGATCAATGTTGCCCGACT
R:
CGTCCAGATTGCACCTGTTGA
Band lengths:
177-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]