GgaEX6043157 @ galGal4
Exon Skipping
Gene
ENSGALG00000012407 | LRP1B
Description
low density lipoprotein receptor-related protein 1B [Source:HGNC Symbol;Acc:HGNC:6693]
Coordinates
chr7:31495700-31501172:-
Coord C1 exon
chr7:31500998-31501172
Coord A exon
chr7:31500609-31500703
Coord C2 exon
chr7:31495700-31495849
Length
95 bp
Sequences
Splice sites
3' ss Seq
AATATGTTTATTTTCTCCAGTAA
3' ss Score
5.49
5' ss Seq
TTGGTAAAT
5' ss Score
4.94
Exon sequences
Seq C1 exon
ATATTCAGAGTATCAGAGGTCTTGCAGTGGATTGGATATCACGTAATTTATACTGGATTAGCTCAGAATTTGATGAAACGCAAATTAATGTGGCACATTTAGATGGTTCCTTAAAAACTTCAATCATCCATGGAATTGATAAACCCCAGTGTCTTGCAGTTCACCCAGTAAAAGG
Seq A exon
TAAGCTCTATTGGACTGATGGAAACACAATTAACATGGCTAATATGGATGGCAGCAACAGCAAAATTCTCTTTCAGAATCAAAAAGATCCTGTTG
Seq C2 exon
GTTTATCAATAGATTATGTGGAGAACAAACTTTACTGGATCAGTTCAGGAAATGGAACCATTAATAGATGCAATCTGGATGGTGGCAATCTTGAAATAATAGACTCAATGAAAGAAGATTTACCGAAAGCCACAGCTTTAACCATAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012407-'42-65,'42-64,43-65=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=PD(26.8=18.6),PF0005812=Ldl_recept_b=PU(0.1=0.0)
A:
PF0005812=Ldl_recept_b=PU(84.2=97.0)
C2:
PF0005812=Ldl_recept_b=PD(13.2=9.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCCCAGTGTCTTGCAGTTC
R:
GCTGTGGCTTTCGGTAAATCT
Band lengths:
170-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]