DreEX0043742 @ danRer10
Exon Skipping
Gene
ENSDARG00000102506 | lrp2a
Description
low density lipoprotein receptor-related protein 2a [Source:ZFIN;Acc:ZDB-GENE-050119-2]
Coordinates
chr9:48829292-48834303:+
Coord C1 exon
chr9:48829292-48829672
Coord A exon
chr9:48831297-48831311
Coord C2 exon
chr9:48834055-48834303
Length
15 bp
Sequences
Splice sites
3' ss Seq
GTTGCCTTCCCTTCTCACAGATG
3' ss Score
10.6
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
CCACTAGGCCTCCGGGCATGTGCCACCATGAGAGTGAGTTTCAGTGCCAGTCAGATGGCAGCTGTGTGCCAGTGAATTGGGAATGTGACGGTCATCCGGACTGTGAGGACGGTTCAGACGAGCATCACGCGTGTCCACCGCGCACCTGTCCCACCACGCAGTTCCGCTGCGACAACGGCAACTGTGTTTACCGTGGCTGGATCTGCGATGGAGATAACGACTGTCGGGATGGGAGCGACGAGCGGGACTGTCCCACACCACCGTTTCGCTGTCCCAGCTGGCAGTGGCAGTGTCCCGGGCATAGCGTGTGTGTGAACCTCAGCAGGGTGTGTGACAACACTCCAGATTGTCCCAACGGAGCCGACGAGTCCCCGCTTTGCA
Seq A exon
ATGAGCCTTTGCCAG
Seq C2 exon
ATCAGGAGAGCTGCTCTGACAATAATGCGGGCTGCACTCACGGCTGCATCCAGGGCCCGTTCGGAGCCCAGTGCACGTGTCCCATGGGCTTCCAGCTGAGCAATGACTCGAAGACGTGTGAGGACATTGATGAATGTCACCCGCCGGGCGTCTGCAGCCAACACTGCTTCAACGAGAGAGGCTCCTTCCGCTGCCACTGTCAGGATGGATACACGCTGGAGGCAGACGCACGCACATGCAAAGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102506-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=30.3),PF0005713=Ldl_recept_a=WD(100=28.0),PF0005713=Ldl_recept_a=WD(100=28.8)
A:
NO
C2:
PF146701=FXa_inhibition=WD(100=42.9),PF0764510=EGF_CA=WD(100=46.4)
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATAGCGTGTGTGTGAACCT
R:
AGCCCGCATTATTGTCAGAGC
Band lengths:
116-131
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]