RnoEX0050696 @ rn6
Exon Skipping
Gene
ENSRNOG00000056184 | Lrp2
Description
LDL receptor related protein 2 [Source:RGD Symbol;Acc:68407]
Coordinates
chr3:55741433-55743101:-
Coord C1 exon
chr3:55742724-55743101
Coord A exon
chr3:55742263-55742277
Coord C2 exon
chr3:55741433-55741681
Length
15 bp
Sequences
Splice sites
3' ss Seq
TAATTAACGCTCTCTCTCAGATG
3' ss Score
6.93
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
CCACCAGGCCTCCCGGCATGTGCCACCTGGATGAGTTCCAGTGCCAAGGAGACGGTACATGCATCCCTAACACCTGGGAGTGTGACGGGCATCCAGACTGTATCCACGGGTCCGACGAGCACACTGGCTGTGTTCCTAAGACCTGCTCGCCGACTCATTTCCTCTGTGACAATGGAAACTGCATCTACAAAGCGTGGATCTGTGATGGGGACAATGATTGTAGGGATATGAGTGATGAGAAGGACTGTCCTACCCAGCCTTTTCACTGTCCTAGCACGCAGTGGCAGTGCCCGGGCTACAGCACCTGTATCAATCTGAGTGCCCTGTGTGACGGCGTCTTTGACTGTCCGAATGGGACTGACGAGTCCCCACTTTGCA
Seq A exon
ATGAACCACAGCAAG
Seq C2 exon
ATCAAGACAGCTGCTCCCATTTTAATGGTGGCTGTACTCATCAGTGCATGCAAGGGCCCTTCGGAGCCACATGCCTATGCCCATTAGGATACCAACTTGCCAATGATACCAAGACCTGTGAAGATATCAATGAGTGCGATATTCCAGGCTTCTGCAGCCAGCACTGCGTCAACATGAGAGGTTCCTTCCGGTGCGCTTGTGATCCAGAATATACGCTGGAAAGTGATGGGCGGACTTGCAAAGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056184-'34-39,'34-38,35-39
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=30.7),PF0005713=Ldl_recept_a=WD(100=29.1),PF0005713=Ldl_recept_a=PU(88.4=29.9)
A:
NO
C2:
PF0005713=Ldl_recept_a=PD(9.3=4.8),PF146701=FXa_inhibition=WD(100=42.9),PF146701=FXa_inhibition=WD(100=41.7)
Main Inclusion Isoform:
ENSRNOT00000082624fB8022
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGTCTTTGACTGTCCGAAT
R:
CCCTTGCATGCACTGATGAGT
Band lengths:
102-117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]