DreEX0044148 @ danRer10
Exon Skipping
Gene
ENSDARG00000077643 | lypd6b
Description
LY6/PLAUR domain containing 6B [Source:ZFIN;Acc:ZDB-GENE-050522-38]
Coordinates
chr9:23337367-23365146:-
Coord C1 exon
chr9:23364983-23365146
Coord A exon
chr9:23340713-23340794
Coord C2 exon
chr9:23337367-23337450
Length
82 bp
Sequences
Splice sites
3' ss Seq
TTTTCTCTTTCCTTTGATAGTCC
3' ss Score
9.13
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
AAGAGGCCTGTTTATTGGCCCTATTTGAATCAGAGGGAGCGTTGTTGTTGCTGTGGACAGATGAAATGAGACAGATGGCACGAGGACTTCATGATGGCAGCTGTTGTCGACTGACCTAACCAGCATTGTTCTCAACGTGTTCTTTTCAAGCTTGCATACCAAAG
Seq A exon
TCCAAGTCAAGACAGGAATCATTGCATATTCTCTCAGGGAATTTGTCTGCTGTGTTAAACCGTCTAGCTTTTACATAAAAAG
Seq C2 exon
TCTCTTTATTAATCAGGGGTCGCCACAGCGGAATGAACCGCCAACTTTTCCAGCACATGTTCTACGCAGCGGATGCCCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077643-'0-5,'0-2,2-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGACAGATGGCACGAGGA
R:
ATCCGCTGCGTAGAACATGTG
Band lengths:
173-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]