DreEX0044150 @ danRer10
Exon Skipping
Gene
ENSDARG00000077643 | lypd6b
Description
LY6/PLAUR domain containing 6B [Source:ZFIN;Acc:ZDB-GENE-050522-38]
Coordinates
chr9:23336029-23340493:-
Coord C1 exon
chr9:23340312-23340493
Coord A exon
chr9:23337367-23337450
Coord C2 exon
chr9:23336029-23336151
Length
84 bp
Sequences
Splice sites
3' ss Seq
TCATTGTCTTTTCGGCTTAGTCT
3' ss Score
6.6
5' ss Seq
CAGGTGCAA
5' ss Score
2.83
Exon sequences
Seq C1 exon
ATCACTGAAGCAGTCAACAGGCCTCTGAAGTTCTCAGACCAGTCAAACAGCACTGGCCTCTTCAGCTTATTTACATCACATTAATTCCACCCAAAGACATGTACTGGATTTAACAATGCATTTAAACGTCAGACTAGACTGGTTTTGATCTTGAAGACCAGCTGCTTTCAGAATATGCAAAA
Seq A exon
TCTCTTTATTAATCAGGGGTCGCCACAGCGGAATGAACCGCCAACTTTTCCAGCACATGTTCTACGCAGCGGATGCCCTTCCAG
Seq C2 exon
GTGTCACTAACAGCGTCTCAAACATGGCAGTCTCAAACTTTGTCTCTGTTCTTGTCCTGCTTCTTGTTAATTTGGTAACAAGTGAGAACATTGATTTCTACAATCTCAGGCCAGCTATAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077643_MULTIEX1-3/6=2-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAACAGCACTGGCCTCTTCA
R:
TGCCATGTTTGAGACGCTGTT
Band lengths:
168-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]