DreEX0044149 @ danRer10
Exon Skipping
Gene
ENSDARG00000077643 | lypd6b
Description
LY6/PLAUR domain containing 6B [Source:ZFIN;Acc:ZDB-GENE-050522-38]
Coordinates
chr9:23336029-23340794:-
Coord C1 exon
chr9:23340713-23340794
Coord A exon
chr9:23340312-23340493
Coord C2 exon
chr9:23336029-23336151
Length
182 bp
Sequences
Splice sites
3' ss Seq
AAAAGTCTTGCTTTTTGCAGATC
3' ss Score
7.97
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
TCCAAGTCAAGACAGGAATCATTGCATATTCTCTCAGGGAATTTGTCTGCTGTGTTAAACCGTCTAGCTTTTACATAAAAAG
Seq A exon
ATCACTGAAGCAGTCAACAGGCCTCTGAAGTTCTCAGACCAGTCAAACAGCACTGGCCTCTTCAGCTTATTTACATCACATTAATTCCACCCAAAGACATGTACTGGATTTAACAATGCATTTAAACGTCAGACTAGACTGGTTTTGATCTTGAAGACCAGCTGCTTTCAGAATATGCAAAA
Seq C2 exon
GTGTCACTAACAGCGTCTCAAACATGGCAGTCTCAAACTTTGTCTCTGTTCTTGTCCTGCTTCTTGTTAATTTGGTAACAAGTGAGAACATTGATTTCTACAATCTCAGGCCAGCTATAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077643_MULTIEX1-2/6=1-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGTCAAGACAGGAATCATTGC
R:
TCTATAGCTGGCCTGAGATTGT
Band lengths:
202-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]