DreEX0045284 @ danRer10
Exon Skipping
Gene
ENSDARG00000059581 | mbd5
Description
methyl-CpG binding domain protein 5 [Source:ZFIN;Acc:ZDB-GENE-070209-125]
Coordinates
chr6:38686-45190:+
Coord C1 exon
chr6:38686-38788
Coord A exon
chr6:39697-41685
Coord C2 exon
chr6:44955-45190
Length
1989 bp
Sequences
Splice sites
3' ss Seq
CGTGCTCTGTGTGCCCGCAGGTG
3' ss Score
13.87
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
CCCCAGCGGATCAGTGCTGTCCTGTCTCGAGCAGGTCAAGTCTTACCTGCTGACCGATGGCACCTGTAAATGTGGTCTGGAATGTCCACTCATCCTCCCGAAG
Seq A exon
GTGTGAGCTCCATGTCTGCCGCTCCGCCTCGAGCAATAAGAAATAAGACCCACGAGAGCCAGCCGGAGTGCAGGAACCCCTTCAAGACGATGATGGCGGCTGGGCAGCGGCACTTCTCTCCGGACCTGTGCCCGCAGCAGCAGCAGGACGGGTTCCCTTCATACCCGCGGCAGAGGCTGAGTGAGCCCGGGCACAGGTCTCCATACCGCAGTGGGCACAGTAGCATGCTGAGCCCTCCGGTGCAGCCCTTCGGGGACAGTTCGGTTTCTCCCAGGACGGATGCTCTCGGCAGTCCTGACGGGGTTCTCCGTGGCACGGCCTGTGGGTTTCAGGGCACCGGCAGCCCTGGAGCTGTCCACAGCAGCAGCCGCGTCCCTCTGTCGTCCCCGGGTGTCCTGGCACATGGTTCACCCGTTGCCCCATCCTCCTGTGTCATGGCGGGCAGGACTAACATGCCTCTGTCGCCCCCTGTGCCCAACAAGAGCCCCGTCATGAAAAAACCCCTGTGCAACTATCCGCCCGGCATGGACTCCAGCAGAGGTGTGTTTCACCATAAGGCCCTGTCTGTGTCTGCGCCCACCCTGCCGCCGCCCTGCGCCCTGCAGAATAAACCGCTGAGCTCTGAAAAAGACCCACTCGGCATCCTGGACCCCATTCCCAGTAAACCCACCCCATCCCCTTTCCAGTCCAGCGCCCACTCTCAGGTACCAATGATGAATGTAAACATCCCGCCCGCCATCGTCCCACTGCCTAGTAACCTGCCCTTGCCCACGGTGAAGCCGGGCCCGGTGGGACACATGCAGAGGGCACCGCACGCCACGTCCATATCCCCGTCTCCCGTCACGTCCCCTGTGCACATGTCTGTGCCCGCGCTGGGTCGTGTGGAAGCATCTCCTCAGCGCTCCCGGTCCTCGTCCACCTCCTCGGAGCAGGGCAGCTTCGCCGTGCCCCCATGTGGCAGCATGAAGGTGCCGCCGCGCTCGCCCCGCTCTGCCATCAGCTCTCCGCGCCCTGCTCTGCCCTCCAGCCCGTCTGCCAAGCCGGAAGCTCTTCATTCGTACAAAGATGTGCCCGCCCAGCTGCTGGCAGGGATGAGTGGCATGAGCGGTCAGCACAACCCCATGTACCCGCCTGCCCCAGCGGGTGCTGGGCCGCAGAAGGAGCACCCAGGTCTGCTGGGGATGCCACTGAACCAGATCCTTAACCAACACAACGCTGCCTCTTTCCCTGCCAGCAGCCTCCTCTCAGCTGCCGCCAAAGCACAGCTAGCAAATCAAAACAAGCTAGGCAGTGGTGGTGGCGCGGTGGGCACGGGGGCGTCCGCTGGGCTCTCCTGCCCGCTCACTACACCGGACCCCAGCAGACCGACGGAGGGCCACGCTGCGCTGAACCCCATGCTGCCGCCCAACCCCGCCATGATGATGCCCAGCGGCGAAGCTCAGAGCGGGCGCGCTGCCCTCCGGGACAAACTCATGGCACAGCAGCGTGACCCCATGCGCAAGAGGAAGCATCCTGCAAGCGTTGCCCACCACGAGAACAGTTTTTTCAACATGGCTGGCATAAGGACACCGTGCCCGCCGGCCGAGCAGATGAGGAAAGCTGCCCGCCTGCCCTCCAACACGTCTATGGCGCAGCTGCTGCAGTCTCTGAGTAACCACAGCTCCCACAGGGGCAGGAGTCCAGCCCTCGCCAGCCCTGGGCGGGCACACTTTGGGGAGGGGGCACAGGTACAGCAGCGGGGACATGGGCAGCCCGACTCTATGCACTGCCCTGCCGTGGAGCCCCAAAGCCACTACTCTGGCATGATGAACCAGATGCAGCCCACGGCCATGGGCAACTGCGCACCCGTGAACCACAGTGGTGCAGTTCCTCTGGCCAACCACATGATGGCGCACACAGGCACTCACTTTCAGCAGCACGTCCAGCCTAATGCCAACTGCATTCTGCCCGGCGGAGAGTCCTGCTGCCCGCAGCCCATGGCAGATGCAG
Seq C2 exon
GTGAGCCCAATCCGCTGAGCTGCAGCATGGCCAACACTGCTCATATGGGTGGCATGATGCCTGCCGCAGGACACATGTACCACCAACACCACCAGCAGCAGCTTCACCCGGCACTGCAGGGCATGCACGGAGTCTCTACATACCCGAGCCAGGGACACTCCTTTACTACGGGCCCTTTCACAGACAGCAGCGTCCCCAACTCCAGCAGCGTGCCCTGCCTGTACCAGGATTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059581_MULTIEX1-2/5=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.966 C2=NA
Domain overlap (PFAM):
C1:
PF0142914=MBD=FE(47.9=100)
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCAGCGGATCAGTGCT
R:
TGGTACAGGCAGGGCACG
Band lengths:
329-2318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]