BtaEX6009919 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019592 | MBD5
Description
methyl-CpG binding domain protein 5 [Source:HGNC Symbol;Acc:HGNC:20444]
Coordinates
chr2:47832647-47851800:-
Coord C1 exon
chr2:47851620-47851800
Coord A exon
chr2:47845124-47847256
Coord C2 exon
chr2:47832647-47832973
Length
2133 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCTCTTTCACATCAGATG
3' ss Score
9.42
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
GTGTTTAATTTTGATCCTGGAGCTGCTGTGAAACAAAGAACTGCAGAAGATGTTAAAGCAGATGAAGATGTCACAAAGCTATGCATACATAAAAGAAAAATCATTGCAGTGGCCACACTTCATAAAAGCATGGAAACCCCACACCCTTCTCTGGTGCTCACCAGTCCCGGAGGAGGAACAA
Seq A exon
ATGCAACTCCAGTAGTACCTTCACGGGCAGCAACTCCAAGATCTGTAAGAAATAAGTCACATGAAGGAATTACAAATTCTGTAATGCCTGAATGTAAGAATCCTTTCAAGTTAATGATTGGATCATCAAACACCATGGGAAGACTATATGTACAAGAACTGCCTGGAAGCCAGCAACAGGAACCCCACCCTGTCTACCCCCGGCAGAGATTGGGCAGCAATGAGCATGGACAGAAGTCTCCATTCCGTGGCAGCCATGGAGGCCTGCCCAGCCCCGCGTCGTCAGGTTCCCAGATATATGGAGACGGCTCGATCTCGCCAAGGACTGACCCACTCGGAAGCCCTGATGTCTTCACAAGAAATAATCCTGGTTTTCACGGAGCTCCCAATTCTAGTCCTATTCACCTGAATAGGACTCCTCTTTCTCCACCTTCAGTAATGCTACATGGTTCTCCTGTACAGTCATCCTGTGCAATGGCTGGAAGGACTAATATACCTCTTTCCCCAACCTTGACTACAAAGAGTCCAGTAATGAAAAAACCAATGTGTAATTTTTCAACTAATATGGAAATACCACGAGCAATGTTCCACCACAAACCACCCCAAGGCCCACCTCCCCCTCCACCTTCTTGTGCTCTTCAGAAAAAGCCATTAACATCTGAGAAAGATCCACTTGGCATTCTTGACCCTATTCCTAGTAAACCGGTGAATCAGAACCCTGTTATCATTAATCCAACTAGTTTCCATTCAAATGTCCACTCTCAGGTACCTGTGATGAATGTAAGCATGCCTCCTGCTGTTGTTCCTTTGCCAAGTAATCTCCCTTTGCCAACCGTAAAACCTGGTCATATGAATCATGGGAGTCATGTACAAAGAGTTCAGCATTCAGCTTCAACCTCCCTGTCCCCTTCTCCAGTGACATCCCCAGTGCACATGATGGGGACTGGAATTGGAAGGATTGAGGCATCGCCCCAAAGATCACGCTCATCTTCCACATCATCAGATCACGGAAATTTCATGATGCCACCTCTAGGACCCCAGGCCAATTGCAGTGGTATTAAGGTTCCACCCAGGTCACCAAGGTCAACAATAGGGTCCCCAAGGCCATCAATGCCATCAAGCCCTTCTACCAAGTCCGATGGACATCATCAGTACAAGGATATCCCTAACCCATTAATTGCTGGAATGAGTAATGTACTAAATCCCCCAAGCAGTGCAGCTTTTCCTACTGCATCTGCCGGAAGTGGTTCTGTAAAGAGTCAGCCTGGTTTGCTGGGAATGCCTTTAAATCAGATCTTGAACCAGCACAATGCTGCCTCCTTTCCAGCAAGTAGTTTACTCTCAGCAGCAGCCAAAGCACAGCTAGCAAATCAAAACAAACTTGCTGGTAACAACAGTAGCAGCAGTAGCAATTCTGGAGCTGTTGCTGGCAGTGGCAACACTGAAGGACATAGCACTTTAAACACCATGTTCCCTCCTACTGCCAACATGCTTCTCCCGTCAGGTGAAGGGCAAAGTGGTCGAGCAGCACTAAGAGATAAGCTGATGTCTCAGCAAAAAGACTCATTGCGGAAAAGAAAACAGCCACCTACCACAGTGTTGAGTTTGCTCAGACAGTCTCAAATGGATAGTTCTGCAGTTCCTAAACCTGGACCCGACTTGCTAAGGAAGCAGGGTCAGGGGTCGTTTCCCATCAGTTCAATGTCTCAGTTACTACAGTCTATGAGTTGTCAAAGCTCTCACTTGAGTAGCAATAGTACCCCGGGTTGTGGGGGCTCAAATACTGCTTTGCCTTGCTCTGCTAACCAGCTGCATTTTACAGATCCCAGTATGAACTCCAGTGTTCTTCAGAATTCACTGACACAGAGCATACCTTTAAGAGGGGAAGCCATGCACTGCCACAATGCAAACACTAACTTTGTTCACAGTAATAGTCCAGTCCCAAACCACCATCTTACAGGTTTAATAAATCAGATTCAGGCTAGCGGGAACTGTGGGATGCTCAGTCAGTCGGGCATGGCTTTAGGAAATTCATTACATCCCAATCCACCTCAGTCAAGAATTTCAACGTCCTCCACTCCAGTGATACCAAACAGCATTGTTAGCAGCTATAATCAAACAAGTTCTGAAGCAG
Seq C2 exon
GCGGTTCAGGACCATCCTCCTCCATAGCCATAGCTGGCATCAACCACCCTGCCATCACAAAGACAACATCTGTTCTTCAAGACGGCGTCATAGTCACCACCGCAGCTGGAAACCCACTGCAGAGTCAGCTGCCCATTGGGAGTGATTTTCCTTTTGTTGGCCAGGAGCACGCACTTCATTTTCCATCCAACAGCACTTCAAACAACCATCTTCCACACCCCTTGAACCCCAGCCTCCTCAGTTCTCTACCTATCTCTTTGCCAGTGAATCAACAGCATCTCCTAAACCAGAATCTATTAAATATCTTCCAGCCTTCAGCAGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019592-'7-11,'7-8,8-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.361 A=0.895 C2=0.336
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]