GgaEX0028887 @ galGal3
Exon Skipping
Gene
ENSGALG00000012449 | MBD5
Description
NA
Coordinates
chr7:36293730-36310462:+
Coord C1 exon
chr7:36293730-36293910
Coord A exon
chr7:36297124-36299262
Coord C2 exon
chr7:36310136-36310462
Length
2139 bp
Sequences
Splice sites
3' ss Seq
TGTTGTGTTTTTAATATCAGGTG
3' ss Score
8.88
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GTCTTTAATTTTGATCCTGGAGCTGCTGTGAAGCAGAGAACTGCTGAAGATGTTAAAGCAGATGAAGATGTCACCAAACTATGCATACATAAAAGAAAGATTATTGCTGTGGCTACACTTCATAAAAGCATGGAAGCACCACATCCTTCACTAGTTCTAACTAGTCCTGGTGGTGGAACAA
Seq A exon
GTGCAACTCCGGTAGTTCCTACTCGAGCAGCAACTCCAAGATCAATGAGGAATAAATCACATGAAGGAATTACAAATTCTGTGATGCCAGAATGTAAGACTCCTTTCAAGTTGATGATAGGGGCATCTAATGCCATGGGTAGGCTTTATGTGCAAGAAATGGCTGGAAGCCAGCAACAAGAACTTCATTCTGTCTATCCTAGGCAGAGATTGGGTAGTAATGAACTTGGACAGAAGTCTCCATATCGTGGCAGTCATGGTGGGATGCCCAGTCCAGCTTCATCAGGATCACAGATATATGGAGACGGCTCAATCTCTCCTAGGACTGACCCACTTGGAAGCCCTGATGTTTTCACAAGGAACAATCCCAGTTTTCATGGAGCACCCAACTCAAGTCCTATTCATATGAACAGGACACCTCTGTCTCCGCCATCAGTAATGCTACATGGTTCTCCCATACAGTCATCCTGTGCAATGGCTGGAAGGACTAATATACCTCTTTCCCCAACCTTGACCACAAAAAGCCCTGTAATGAAAAAACCCATGTGTAATTTTTCAGCTGGTATGGAAATACCACGAGCAATGTTTCACCATAAACCACCCCAAGGTCCACCTCCACCTCCTCCACCGCCTTCTTGTGCTCTTCAGAAAAAGCCATTAACATCAGAAAAGGATCCACTTGGCATACTTGACCCTATTCCTAGCAAACCAGTCAATCAGAATCCTGTTATCATTAACCCAACTACTTTCCATTCAAATGTCCACTCTCAGGTACCCGTGATGAATGTAAGCATGCCTCCTGCTGTCGTCCCTTTGCCAAGTAATCTTCCTTTGCCAACTGTAAAACCTGGTCACGTGAACCATGGAAGTCATGTTCAAAGAGTTCAGCATTCAGCTTCTACTTCCCTATCTCCTTCACCAGTGACATCCCCAGTTCATATGATGGGATCCGGGATTGGAAGGATAGAGGCTTCTCCCCAAAGATCACGTTCTTCTTCCACATCATCAGATCATGGAAATTTCCTGCTGCCTCCAGTAGGACCGCAGTCATCTTGTACTGGTATTAAAGTTCCTCCCAGGTCCCCACGGTCAACAATAGGGTCGCCAAGACCGTCTATGCCATCTAGCCCCTCCACCAAGCATGATGGACTTAATCAATACAAGGACATCCCTAACCCATTAATTGCTGGAATGAGTAATGTATTAAATCCTCCAAACAATGCAGTTTTTTCTACTGCATCGGCTGGAAGTGGTTCTTTGAAGAGTCAGCCTGGTTTGCTGGGAATGCCTTTAAATCAGATCTTGAACCAGCACAATGCTGCCTCTTTTCCAGCAAGTAGTTTACTCTCAGCAGCAGCCAAAGCACAGCTAGCAAATCAAAATAAACTTGCTGGTAACAACAATAACAGCAGTAGCAATTCTGGACCTGTTGCCAGCGGTGGCAACAACGAAGGACATAGCACTTTAAATACCATGTTCCCTCCTGCTGCCAATGTGCTTCTACCAACGACTGAAGGGCAAAGTGGTCGAGCAGCACTGAGAGATAAACTGATGTCTCAGCAAAAAGATCCTCTGAGAAAAAGAAAGCAGCCAACCACCACAGTGTTGAGTTTGCTGAGGCAGTCTCAGTTGGAGAGTTCTGGAGTTTCCAAAGCTGGATCTGATTTAGTAAGAAAGCAAAGTCAAAGCTCTTTTCCCATCAGCTCTATGTCCCAATTACTTCAGTCCATGAGTTGTCAAAGCTCTCACATGAGCAGCAATAGTACTACCAGCTGTGGGAGCTCAAACACTGTTTTACCTTGCTCTGGTAACCAGATGCATTTTGCAGACACCAGTATGAACTCTGGCACTCTTCAGAACTCACTGGCACAGAGTTTACCATTACGAGGGGAAGGTATGCACTGCCAGAACACAAACACTAACTTTGTCCATGGTACTAGCCCTGCCACCACCAACCATCTCGCGGGTTTAATAAATCAGATGCAGGCTAGTGGGAACTGTGGGATGCTCAGTCAGTCAGGAATGGCTTTAGGAAATTCATTACATCCGAACCCACCTCAGCCAAGAATCCAGGCATCCTCCACTCCAGTGATACCAAACAGCATTGCTAGCAGCTGTAATCAAACAAGTCCTGAAGCAG
Seq C2 exon
GGGGTTCAGGACCATCATCATCAATAGCCATAGCTGGCACCAGCCAACCTGCCATCACAAAGACAACATCTGTTCTTCAAGATGGTGTTATAGTCACTACTGCAGCTGGAAACCCTCTTCAGAGCCAGCTGCCCATTGGGGGTGATTTCCCTTTCGCTGGCCACGAACACTCGCTTCATTTCCCGCAGAACAGCTCTTCAAACAACAATCTTCCACCTTCTTTGAATCAAAACCTCCTCAGTTCTCTACCTATCTCTTTGCCAGTGAATCAGCAACATCTCCTAAGCCAGAATCTATTAAATATACTGCAGCCTTCAGCAGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012449_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.306 A=0.909 C2=0.424
Domain overlap (PFAM):
C1:
PF0142914=MBD=PD(16.2=18.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event