RnoEX6016720 @ rn6
Exon Skipping
Gene
ENSRNOG00000027596 | Mbd5
Description
methyl-CpG binding domain protein 5 [Source:RGD Symbol;Acc:1562961]
Coordinates
chr3:33445197-33465546:+
Coord C1 exon
chr3:33445197-33445377
Coord A exon
chr3:33450203-33452338
Coord C2 exon
chr3:33465220-33465546
Length
2136 bp
Sequences
Splice sites
3' ss Seq
CTTTTTCTCTTTCCCATCAGATG
3' ss Score
11.37
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
GTGTTTAACTTTGATCCTGGAGCTGCTGTGAAGCAGAGAACGGCAGAAGACGTTAAGGCAGATGACGATGTCACAAAGCTGTGCACACATAAGAGAAAGATCATTGCAGTGGCCACCCTCCACCAAAGCATGGAGGCCCCACACCCTTCTCTGGTGCTCACCAGTCCTGGAGGAGGAACAA
Seq A exon
ATGCAGCCCCAGCAGTACCTTCCCGGGCGGCAACTCCAAGATCAGCGAGAAACAAGGCTCATGAAGGAATTACAAATTCCATAATGCCAGAGTGTAAGAATCCTTTCAAGCTAGTGGCTGGATCATCGAATGCCATGGGAAGGTTATACATGCAGGACCTGCCTGGAAGCCAGCAGCAGGAACTCCACACTGTCTACCCCCGCCAGAGATTGGGCAGTAGTGAGCACGGACAGAAATCTCCATTTCGTGGCAGCCATGGAGGCCTGCCCAGCCCAGCGTCATCAGGGTCCCAGATCTATGGAGATGGCTCAATCTCTCCAAGGACTGACCCTCTTGGAAGCCCTGATGTCTTCACAAGAAATAACCCTGGTTTTCATGGAGCTCCCAATTCCAGTCCTATTCACCTGAATAGGACTCCTCTTTCTCCACCTTCAGTAATGCTACATGGTTCTCCCGTACAGTCATCCTGTGCAATGGCTGGAAGAACTAATATACCTCTTTCCCCAACCTTGACTACAAAGAGTCCAGTAATGAAAAAACCAATGTGTAATTTTTCAGCTAATATGGAAATACCACGAGCAATGTTCCACCACAAAACACCCCAAGGCCCACCTCCCCCTCCTCCACCTTCTTGTGCTCTTCAGAAAAAGCCATTAACATCTGAGAAAGATCCACTTGGCATTCTTGACCCTATTCCTAGTAAACCAGTGAATCAGAACCCAATTATCATTAATCCAACCAGTTTCCATTCAAACGTCCACTCTCAGGTACCTGTGATGAATGTAAGCATGCCTCCTGCTGTTGTTCCTTTGCCAAGTAATCTCCCTTTGCCAACTGTAAAACCTGGTCATATGAATCACGGGAGTCATGTACAAAGAATTCAGCATTCAACTTCAACCTCCCTGTCCCCTTCTCCAGTGACATCCCCAGTGCACATGATGGGGACTGGAATTGGAAGGATTGAGGCATCGCCCCAAAGATCACGCTCATCTTCCACATCATCAGATCATGGAAATTTCATGATGCCACCTGTAGGACCCCAGGCCTCTTGTAGTGGCATAAAGGTTCCACCTAGGTCACCAAGGTCAACAATAGGTTCCCCAAGGCCATCAATGCCATCAAGCCCTTCCACCAAGTCTGATGGACATCATCAGTACAAGGATATCCCTAACCCATTAATTGCTGGAATGAGTAATGTACTCAATACCCCAAGCAGTGCAGCCTTTCCTACTGCACCTGCCGGAAATGGTTCTGTAAAGAGTCAGCCTGGTTTGCTGGGAATGCCTTTAAATCAGATTTTGAACCAGCACAATGCTGCCTCCTTTCCAGCAAGTAGTTTACTCTCAGCAGCAGCCAAAGCACAGCTAGCAAATCAAAACAAACTTGCTGGTAACAACAGTAGCAGCAGTAACAGTTCTGGAGCTGTTGCCAGCAGCGGCAACACTGAAGGACACAGCACTTTAAACACCATGTTCCCTCCGACTGCCAACATGCTTCTCCCAACAGGTGAAGGTCAAAGTGGTCGAGCAGCACTAAGAGATAAGTTGATGTCTCAGCAAAAAGACTCATTACGGAAAAGAAAGCAGCCACCTACCACAGTGTTGAGTTTGCTCAGACAGTCTCAAATGGATAGTTCTGCAGCTCCTAAACCTGCACCTGACTTGCTAAGGAAGCATGGGCAGGGGTCATTTCCCATCAGTTCAATGTCTCAGTTACTACAGTCTATGAGTTGTCAAAGCTCTCACTTGAGTAGCAATAGTACCCCGGGTTGTGGGGGATCAAATACTGCTTTGCCTTGCTCTGCTAACCAGCTGCATTTTCCAGATCCTAATATGAATTCCACTGTTCTTCAGAATTCACTGACACAGAGCATACCTTTAAGAGGGGAAGCCGTGCACTGCCACAATGCAAACACTAACTTTGTTCACAGTAACAGTCCAGTTCCCAACCACCATCTTGCAGGTTTAATAAATCAGATTCAGGCTAGCGGGAACTGTGGGATGCTCAGTCAGTCGGGCATGGCTTTAGGAAACTCATTACATCCCAATCCACCTCAGTCAAGAATTTCAACGTCCTCCACTCCAGTGATACCAAACAGCATTGTTAGCAGCTATAATCAAACAAGTTCTGAAGCAG
Seq C2 exon
GTGGTTCAAGCCTGCCGTCCTCCATAGCTATAGCTGGCAGCAGCCACCCTGCCATCACAAAGACAACATCTGTTCTCCAAGATGGTGTCATAGTCACCACCGCAGCCGGAAACCCACTGCAGAGTCAGCTGCCCATTGGGAGTGACTTTCCTTTTGTTGGCCAAGAGCATGCCCTTCATTTTCCATCCAACAGCACTTCAAACAACCATCTTCCACACCCCTTGAACCCCAGCCTCCTCAGTTCTCTACCTATCTCTTTGCCAGTGAATCAACAGCATCTCCTAAACCAGAATCTATTAAATATCCTCCAGCCTTCAGCAGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027596-'7-11,'7-9,9-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.426 A=0.891 C2=0.344
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]