GgaEX1066334 @ galGal4
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr7:34169521-34183561:+
Coord C1 exon
chr7:34169521-34169613
Coord A exon
chr7:34170503-34171659
Coord C2 exon
chr7:34182533-34183561
Length
1157 bp
Sequences
Splice sites
3' ss Seq
ATAGAGGCTTCTCCCCAAAGATC
3' ss Score
2.32
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GTGCAACTCCGGTAGTTCCTACTCGAGCAGCAACTCCAAGATCAATGAGGAATAAATCACATGAAGGAATTACAAATTCTGTGATGCCAGAAT
Seq A exon
ATCACGTTCTTCTTCCACATCATCAGATCATGGAAATTTCCTGCTGCCTCCAGTAGGACCGCAGTCATCTTGTACTGGTATTAAAGTTCCTCCCAGGTCCCCACGGTCAACAATAGGGTCGCCAAGACCGTCTATGCCATCTAGCCCCTCCACCAAGCATGATGGACTTAATCAATACAAGGACATCCCTAACCCATTAATTGCTGGAATGAGTAATGTATTAAATCCTCCAAACAATGCAGTTTTTTCTACTGCATCGGCTGGAAGTGGTTCTTTGAAGAGTCAGCCTGGTTTGCTGGGAATGCCTTTAAATCAGATCTTGAACCAGCACAATGCTGCCTCTTTTCCAGCAAGTAGTTTACTCTCAGCAGCAGCCAAAGCACAGCTAGCAAATCAAAATAAACTTGCTGGTAACAACAATAACAGCAGTAGCAATTCTGGACCTGTTGCCAGCGGTGGCAACAACGAAGGACATAGCACTTTAAATACCATGTTCCCTCCTGCTGCCAATGTGCTTCTACCAACGACTGAAGGGCAAAGTGGTCGAGCAGCACTGAGAGATAAACTGATGTCTCAGCAAAAAGATCCTCTGAGAAAAAGAAAGCAGCCAACCACCACAGTGTTGAGTTTGCTGAGGCAGTCTCAGTTGGAGAGTTCTGGAGTTTCCAAAGCTGGATCTGATTTAGTAAGAAAGCAAAGTCAAAGCTCTTTTCCCATCAGCTCTATGTCCCAATTACTTCAGTCCATGAGTTGTCAAAGCTCTCACATGAGCAGCAATAGTACTACCAGCTGTGGGAGCTCAAACACTGTTTTACCTTGCTCTGGTAACCAGATGCATTTTGCAGACACCAGTATGAACTCTGGCACTCTTCAGAACTCACTGGCACAGAGTTTACCATTACGAGGGGAAGGTATGCACTGCCAGAACACAAACACTAACTTTGTCCATGGTACTAGCCCTGCCACCACCAACCATCTCGCGGGTTTAATAAATCAGATGCAGGCTAGTGGGAACTGTGGGATGCTCAGTCAGTCAGGAATGGCTTTAGGAAATTCATTACATCCGAACCCACCTCAGCCAAGAATCCAGGCATCCTCCACTCCAGTGATACCAAACAGCATTGCTAGCAGCTGTAATCAAACAAGTCCTGAAGCAG
Seq C2 exon
GGGGTTCAGGACCATCATCATCAATAGCCATAGCTGGCACCAGCCAACCTGCCATCACAAAGACAACATCTGTTCTTCAAGATGGTGTTATAGTCACTACTGCAGCTGGAAACCCTCTTCAGAGCCAGCTGCCCATTGGGGGTGATTTCCCTTTCGCTGGCCACGAACACTCGCTTCATTTCCCGCAGAACAGCTCTTCAAACAACAATCTTCCACCTTCTTTGAATCAAAACCTCCTCAGTTCTCTACCTATCTCTTTGCCAGTGAATCAGCAACATCTCCTAAGCCAGAATCTATTAAATATACTGCAGCCTTCAGCAGGAGAAGGCAAGTCTGAGGTCAACCTCAACCCTTTAGGTTTTCTCAACCCGAATGTAAATGCTGCTTTAGCTTTTCTCTCCAGTGACGTGGATGGGCAGGTATTACAGCCTGTTCATTTTCAGCTTCTAGCAACCCTCCTCCAGAACCAAGCCCAAGCAGCTGCCATGCTTCCCCTACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012449_MULTIEX1-4/4=3-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGCAGCAACTCCAAGATCA
R:
AGATGTTGCTGATTCACTGGCA
Band lengths:
350-1507
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]