DreEX0045787 @ danRer10
Exon Skipping
Gene
ENSDARG00000040779 | med16
Description
mediator complex subunit 16 [Source:ZFIN;Acc:ZDB-GENE-090306-4]
Coordinates
chr11:14074459-14080352:+
Coord C1 exon
chr11:14074459-14074592
Coord A exon
chr11:14079856-14080048
Coord C2 exon
chr11:14080139-14080352
Length
193 bp
Sequences
Splice sites
3' ss Seq
GTTGGATTTTCTTTTTTCAGGGC
3' ss Score
8.63
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
ACATTGATAAGGTGATGATCAACCTGAAGACAGAGGAGTTTGTTCTGGATGGACCACCCCTCCAGTCCCTTCAGCAGCTTATTCAGTGGGTCGGAGACTTTGTTCTGTACCTGCTGGCCAACCTTCCCAACCAG
Seq A exon
GGCTCCATTGTGCGTCCAGGGTTTGGGTTCTTGCGTGACGGTGCGTCTCTGGGCATGCTAAGAGAGATGCTGGTGATGATCCGTATTTGGGGCCTTCTGAAACCAGGCTGTTTGCCCATTTACACAGCCACATCTGACAACCAGGACAGCATGTTTCTGCTCTTCCGCCTGCTCACCAAACTCTGGCTCTGCT
Seq C2 exon
CTCGAGATGAGAGTCACCCGCAGGACCCTGATGAGACATTGATTGATGAGTGCTGTCTGTTGCCCAGTCAGCTCCTTGTACCCAGCATGGACTGGCTGCCCATCAATGATGGTGTCATTACTAAGATCCAGGGCAAACACCAGCTCAGATTGCAGTTCGGCAAACCGTACACCCTGCCTGGGGTCAACCCCAATGCACAAGTGGAGATTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040779-'12-13,'12-12,13-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF116353=Med16=FE(6.1=100)
A:
PF116353=Med16=FE(8.9=100)
C2:
PF116353=Med16=FE(9.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGTTCTGTACCTGCTGGCC
R:
CTCCACTTGTGCATTGGGGTT
Band lengths:
242-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]