GgaEX1035765 @ galGal3
Exon Skipping
Gene
ENSGALG00000001978 | MED16
Description
NA
Coordinates
chr28:2324171-2325121:-
Coord C1 exon
chr28:2324988-2325121
Coord A exon
chr28:2324644-2324836
Coord C2 exon
chr28:2324171-2324387
Length
193 bp
Sequences
Splice sites
3' ss Seq
AATGATTCTCCTCTTTGCAGGGC
3' ss Score
10.29
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
ACATTGACAAGGTGATGATCAACTTAAAGACAGAGGAGTTTGTCCTGGAGATGAACACATTGCAGTCTCTGCAGCAGCTCATCCAGTGGGTGGGGGATTTTGTGCTCTATCTACTGGCCAGCCTGCCTAACCAG
Seq A exon
GGCTCTCCTGTGAGGCCAGGCCACAGCTTCCTGCGGGATGGAGCATCCCTGGGCATGTTCAGGGAGCTGATGGTGGTGATCCGTATTTGGGGGCTGCTGAAGCCAAGCTGCCTCCCCGTCTACACAGCAACCTCTGACACTCAGGACAGCATGTCCCTCCTCTTCAGGCTCCTCACTAAACTCTGGTTGTGCT
Seq C2 exon
GTCGTGAAGAAAGTCACATAACGGAGCCAGATGATACCCTGATAGATGAATGCTGCCTCCTGCCCAGCCAGTTGCTCATTCCCAATATTGATTGGTTGCCTATCAACGATGGCATTATCAGCAAGCTGCAGAACAAACAACTTGTGAGGCTGCAGTTTGGAAAAGCTCCTGGGCTCATTGGTCACACTGTGTCTTCCCAGTTTGATGCCTTTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001978-'12-14,'12-13,13-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF116353=Med16=FE(6.1=100)
A:
PF116353=Med16=FE(8.9=100)
C2:
PF116353=Med16=FE(10.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCTCTGCAGCAGCTCATC
R:
CCAATGAGCCCAGGAGCTTTT
Band lengths:
253-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]