DreEX0046172 @ danRer10
Exon Skipping
Gene
ENSDARG00000015349 | mfge8a
Description
milk fat globule-EGF factor 8 protein a [Source:ZFIN;Acc:ZDB-GENE-050327-9]
Coordinates
chr7:48523922-48528255:-
Coord C1 exon
chr7:48528124-48528255
Coord A exon
chr7:48524350-48524463
Coord C2 exon
chr7:48523922-48524103
Length
114 bp
Sequences
Splice sites
3' ss Seq
TTATTGGTTTTCGTACACAGATG
3' ss Score
9.22
5' ss Seq
TACGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
GTCCTTGCAGCCCAAACCCATGTAAAAATGATGGCACATGCGAAGTGATCGTTAACTCCAGAAGAGGAGACACTTTTAATGAATATGTATGCAAATGCCAACCTGGTTTCGAAGGTGCACACTGCCAAATCA
Seq A exon
ATGTGAATGACTGCGCAAACAAGCCTTGTATGAACGGAGGTGTGTGTCGTGATCTGGATGGCGACTACACCTGCCAGTGCCCTTCTCCATATGTCGGAAAACAGTGCAAGCTAC
Seq C2 exon
GCTGTACATCTCTATTGGGGATGGAGGAAGGAGGAATCATAGAGTCCCAGATTTCAGCTTCTTCTGTTCACTCTGGAATTCTGGGACTGCAGCACTGGGGACCTTCGCTTGCACGCCTTAATAACCGGGGGATTGTCAATGCCTGGAGCTCAGCACCCCAAGACAAGAACCCCTGGATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000015349-'4-4,'4-3,5-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=86.7)
A:
PF0000822=EGF=WD(100=79.5)
C2:
PF0075420=F5_F8_type_C=PU(31.7=72.1)
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCAGCCCAAACCCATGTA
R:
CCCGGTTATTAAGGCGTGCAA
Band lengths:
258-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]