Special

GgaEX0009563 @ galGal3

Exon Skipping

Gene
Description
NA
Coordinates
chr10:14722631-14723374:+
Coord C1 exon
chr10:14722631-14722756
Coord A exon
chr10:14722882-14722995
Coord C2 exon
chr10:14723193-14723374
Length
114 bp
Sequences
Splice sites
3' ss Seq
CCACCTCCTCTGCCTCCTAGACA
3' ss Score
7.55
5' ss Seq
CCCGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GCCCCTGCCACCCCAATCCTTGCCACAACAATGGTGAGTGCCAGTTGGTCCCAAATCGAGGGGACGTCTTCACCGACTACATCTGCAAGTGCCCCACAGGGTATGATGGAGTGCACTGCCAGAACA
Seq A exon
ACAAGAATGAGTGCTCCTCAGAGCCTTGCAAAAATGGGGGCACCTGCGTGGACATGGATGGTGACTACGCCTGCAAGTGTCCTTCTCCCTTCTTTGGGAAGACTTGCCATGCCC
Seq C2 exon
GCTGTGCCATTCCCCTGGGCATGGAAGGAGGGGCCATCTCCGATGCACAGCTCTCAGCCTCCTCCGTCTACTATGGTTTCCTTGGCCTCCAGCGCTGGGGGCCTGAGCTCGCTCGCCTCAACAACCACGGCATTGTCAACGCGTGGACCTCCAGCAACTATGACAAGAGCCCGTGGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006702_CASSETTE2
Average complexity
S
Mappability confidence:
NA
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0000822=EGF=WD(100=86.0)
A:
PF0000822=EGF=WD(100=79.5)
C2:
PF0075420=F5_F8_type_C=PU(31.7=72.1)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
HIGH PSI
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTTGGTCCCAAATCGAGG
R:
CATAGTTGCTGGAGGTCCACG
Band lengths:
248-362
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]