GgaEX0009563 @ galGal4
Exon Skipping
Gene
ENSGALG00000006702 | MFGE8
Description
lactadherin isoform 2 precursor [Source:RefSeq peptide;Acc:NP_001264040]
Coordinates
chr10:12528165-12528908:+
Coord C1 exon
chr10:12528165-12528290
Coord A exon
chr10:12528416-12528529
Coord C2 exon
chr10:12528727-12528908
Length
114 bp
Sequences
Splice sites
3' ss Seq
CCACCTCCTCTGCCTCCTAGACA
3' ss Score
7.55
5' ss Seq
CCCGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GCCCCTGCCACCCCAATCCTTGCCACAACAATGGTGAGTGCCAGTTGGTCCCAAATCGAGGGGACGTCTTCACCGACTACATCTGCAAGTGCCCCACAGGGTATGATGGAGTGCACTGCCAGAACA
Seq A exon
ACAAGAATGAGTGCTCCTCAGAGCCTTGCAAAAATGGGGGCACCTGCGTGGACATGGATGGTGACTACGCCTGCAAGTGTCCTTCTCCCTTCTTTGGGAAGACTTGCCATGCCC
Seq C2 exon
GCTGTGCCATTCCCCTGGGCATGGAAGGAGGGGCCATCTCCGATGCACAGCTCTCAGCCTCCTCCGTCTACTATGGTTTCCTTGGCCTCCAGCGCTGGGGGCCTGAGCTCGCTCGCCTCAACAACCACGGCATTGTCAACGCGTGGACCTCCAGCAACTATGACAAGAGCCCGTGGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006702_MULTIEX1-4/4=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=86.0)
A:
PF0000822=EGF=WD(100=79.5)
C2:
PF0075420=F5_F8_type_C=PU(31.7=72.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTTGGTCCCAAATCGAGG
R:
CATAGTTGCTGGAGGTCCACG
Band lengths:
248-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]