DreEX0048336 @ danRer10
Exon Skipping
Gene
ENSDARG00000000103 | myh10
Description
myosin, heavy chain 10, non-muscle [Source:ZFIN;Acc:ZDB-GENE-030616-162]
Coordinates
chr6:7446541-7451165:+
Coord C1 exon
chr6:7446541-7446684
Coord A exon
chr6:7447585-7447680
Coord C2 exon
chr6:7451047-7451165
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTCTGTCACTCCAGCAA
3' ss Score
6.72
5' ss Seq
CAGGTACCA
5' ss Score
7.88
Exon sequences
Seq C1 exon
CTGATCTACTCCTGGAGGGTTTCAATAGCTACCGCTTCCTCTCCAATGGTAACATTCCCATCCCTGGCCAACAGGACAAGGATAATTTCCAAGAGACCATGGAAGCCATGCATATTATGAGCTTCAATCATGAGGAAATCTTAT
Seq A exon
CAATGCTGAAGGTGGTTTCAGCCGTCCTGCAGTTTGGTAACATTGTGTTCAAGAAGGAGAGAAACACAGATCAGGCCTCTATGCCTGAAAACACAG
Seq C2 exon
CTGCTCAAAAACTTTGCCACCTGCTCGGAATGAATGTCATGGAGTTCACTCGTGCTATCCTGTCTCCAAGAATCAAAGTGGGCAGAGACTACGTACAGAAAGCCCAAACTAAAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000103-'14-14,'14-13,15-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.102 A=0.152 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.9=100)
A:
PF0006316=Myosin_head=FE(4.6=100)
C2:
PF0006316=Myosin_head=FE(5.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTACCGCTTCCTCTCCAAT
R:
GCACGAGTGAACTCCATGACA
Band lengths:
173-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]