MmuEX6086422 @ mm10
Exon Skipping
Gene
ENSMUSG00000020900 | Myh10
Description
myosin, heavy polypeptide 10, non-muscle [Source:MGI Symbol;Acc:MGI:1930780]
Coordinates
chr11:68762511-68764354:+
Coord C1 exon
chr11:68762511-68762654
Coord A exon
chr11:68762838-68762933
Coord C2 exon
chr11:68764236-68764354
Length
96 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTTATCCATATAAAGCAA
3' ss Score
4.85
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CCGACTTACTCCTGGAAGGTTTCAACAACTACAGATTCCTCTCCAATGGCTATATTCCTATTCCTGGACAGCAAGACAAGGATAACTTCCAGGAGACCATGGAAGCCATGCACATCATGGGCTTCTCTCACGAAGAGATCCTCT
Seq A exon
CAATGCTTAAAGTCGTATCTTCAGTGCTGCAGTTTGGAAACATCTCTTTCAAAAAGGAGAGAAACACTGACCAAGCCTCCATGCCGGAGAACACAG
Seq C2 exon
TCGCACAGAAGCTCTGCCACCTGCTCGGGATGAATGTGATGGAGTTCACTCGGGCTATCCTCACGCCCAGGATCAAGGTTGGCCGGGATTACGTACAGAAAGCCCAGACCAAAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020900-'21-32,'21-24,32-32=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.182 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.7=100)
A:
PF0006316=Myosin_head=FE(4.5=100)
C2:
PF0006316=Myosin_head=FE(5.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGGACAGCAAGACAAGGA
R:
CTGTACGTAATCCCGGCCAAC
Band lengths:
181-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types