GgaEX1037831 @ galGal3
Exon Skipping
Gene
ENSGALG00000001183 | Q789A6_CHICK
Description
NA
Coordinates
chr18:1719279-1722742:-
Coord C1 exon
chr18:1722599-1722742
Coord A exon
chr18:1722200-1722295
Coord C2 exon
chr18:1719279-1719397
Length
96 bp
Sequences
Splice sites
3' ss Seq
GTATGTCTTTGTTAATACAGCAA
3' ss Score
3.86
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
CTGACTTGCTGCTTGAAGGATTTAACAATTACAGATTTTTATCCAATGGCTACATCCCCATTCCTGGGCAGCAAGACAAGGATAACTTTCAGGAGACGATGGAAGCAATGCATATCATGGGCTTTTCGCACGATGAGATCTTGT
Seq A exon
CAATGCTGAAAGTGGTGTCTTCAGTGCTACAGTTTGGAAATATTTCCTTCAAGAAGGAGAGAAATACTGATCAAGCTTCTATGCCAGAAAATACTG
Seq C2 exon
TCGCACAGAAACTCTGCCATCTACTGGGAATGAATGTTATGGAATTCACCCGGGCCATACTGACACCACGCATCAAGGTCGGCAGAGACTATGTTCAGAAAGCCCAGACCAAAGAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001183-'11-13,'11-12,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.182 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.3=100)
A:
PF0006316=Myosin_head=FE(4.9=100)
C2:
PF0006316=Myosin_head=FE(5.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTACATCCCCATTCCTGG
R:
GACCTTGATGCGTGGTGTCAG
Band lengths:
178-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]