DreEX0048418 @ danRer10
Exon Skipping
Gene
ENSDARG00000001993 | myhb
Description
myosin, heavy chain b [Source:ZFIN;Acc:ZDB-GENE-081124-1]
Coordinates
chr6:40748776-40749334:-
Coord C1 exon
chr6:40749209-40749334
Coord A exon
chr6:40748958-40749128
Coord C2 exon
chr6:40748776-40748880
Length
171 bp
Sequences
Splice sites
3' ss Seq
GGGTTAAAAAAATATATCAGGCC
3' ss Score
0.62
5' ss Seq
AGAGTATGT
5' ss Score
5.66
Exon sequences
Seq C1 exon
AACACCAGTCTTATTAACACCAAGAAAAAGCTGGAAGCAGATCTTGTTCAGATTCAAGGTGAGATGGAGGACGTGGTCCAGGAAGCTCGAAATGCTGAAGAGAAGGCAAAGAAAGCTATAACTGAT
Seq A exon
GCCGCCATGATGGCAGAGGAGCTGAAGAAGGAGCAGGACACAAGCGCTCACCTTGAGAGGATGAAGAAGAATCTGGAGGTTACAGTCAAAGACCTGCAGCACCGTCTGGATGAGGCTGAGAGTCTGGCTATGAAGGGTGGAAAGAAGCAGCTCCAGAAGCTGGAGGCCAGA
Seq C2 exon
GTTCGTGAACTGGAGAGTGAAGTCGAAGCTGAACAGAGACGTGGTGCTGATGCTGTGAAAGGAGTCCGCAAATATGAAAGAAGAGTGAAGGAACTGACTTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001993-'37-38,'37-37,38-38
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.702 C2=0.514
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.8=100)
A:
PF0157614=Myosin_tail_1=FE(6.5=100)
C2:
PF0157614=Myosin_tail_1=FE(3.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACACCAGTCTTATTAACACCAAGA
R:
AAGTCAGTTCCTTCACTCTTCTT
Band lengths:
226-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]