BtaEX6087152 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000025337 | MYH13
Description
myosin, heavy chain 13, skeletal muscle [Source:HGNC Symbol;Acc:HGNC:7571]
Coordinates
chr19:29958567-29961217:-
Coord C1 exon
chr19:29961092-29961217
Coord A exon
chr19:29960666-29960836
Coord C2 exon
chr19:29958567-29958671
Length
171 bp
Sequences
Splice sites
3' ss Seq
ACGTTTCCTGTGAACCACAGGCG
3' ss Score
6.74
5' ss Seq
CGGGTAGGG
5' ss Score
6.91
Exon sequences
Seq C1 exon
AACACGAGCCTGATAAATACCAAGAAAAAACTGGAAGCTGACATAGCCCAATGCCAGGCAGAGGTGGAGAACTCTATCCAGGAGTCCAAAAATGCGGAGGAGAAGGCCAAGAAAGCCATCACAGAC
Seq A exon
GCGGCCATGATGGCCGAGGAGCTGAAGAAGGAGCAGGACACCAGCGCCCACCTGGAGCGGATGATGAAGAACCTGGAGCAGACGGTGAAGGACCTGCAGCACCGCCTGGATGAGGCTGAGCAGCTGGCCCTGAAGGGCGGGAAGAAGCAGATCCACAAGCTGGAGAATCGG
Seq C2 exon
GTACGGGAGTTAGAAAGCGAGCTGGATGCTGAGCAGAAGAGGGGGGCTGAGGCTCTGAAGGGCGCCCACAGATATGAGCGAAAGGTCAAGGAGATGACTTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025337-'33-34,'33-33,34-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.833 A=0.912 C2=0.943
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.8=100)
A:
PF0157614=Myosin_tail_1=FE(6.5=100),PF0026115=Tropomyosin=PU(26.6=71.9)
C2:
PF0157614=Myosin_tail_1=FE(4.0=100),PF0026115=Tropomyosin=FE(22.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACACGAGCCTGATAAATACCA
R:
AAGTCATCTCCTTGACCTTTCGC
Band lengths:
226-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]