MmuEX7006824 @ mm10
Exon Skipping
Gene
ENSMUSG00000060180 | Myh13
Description
myosin, heavy polypeptide 13, skeletal muscle [Source:MGI Symbol;Acc:MGI:1339967]
Coordinates
chr11:67367153-67369209:+
Coord C1 exon
chr11:67367153-67367278
Coord A exon
chr11:67367557-67367727
Coord C2 exon
chr11:67369105-67369209
Length
171 bp
Sequences
Splice sites
3' ss Seq
TGTCCTGTGAACTGACCCAGGCC
3' ss Score
3.96
5' ss Seq
AGGGTGGGT
5' ss Score
5.37
Exon sequences
Seq C1 exon
AACACGAGCCTGATAAATACCAAGAAAAAACTAGAGGCCGACTTGGCTCAATGCCAGGCAGAAGTGGAGAACTCCATCCAGGAGTCCAGAAACGCAGAAGAGAAGGCCAAGAAGGCCATCACTGAC
Seq A exon
GCCGCCATGATGGCGGAGGAGCTGAAGAAGGAGCAGGACACCAGCGCCCACCTGGAGAGGATGAAGAAGAACCTGGAGCAGACGGTGAAGGACCTGCAGCACCGTCTGGATGAGGCTGAGCAGCTGGCGCTGAAGGGCGGCAAGAAGCAGATCCAGAAACTGGAGGCCAGG
Seq C2 exon
GTGCGGGAGTTGGAAAGCGAGCTGGATGCTGAGCAGAAGAGAGGAGCTGAAGCTCTGAAGGGAGCCCACAAATATGAGCGCAAAGTTAAAGAGATGACTTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060180-'34-44,'34-40,45-44=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.740 A=0.751 C2=0.845
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(20.2=100)
A:
PF0157614=Myosin_tail_1=FE(27.4=100)
C2:
PF0157614=Myosin_tail_1=FE(15.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACACGAGCCTGATAAATACCA
R:
AAGTCATCTCTTTAACTTTGCGCT
Band lengths:
226-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types