GgaEX1037860 @ galGal4
Exon Skipping
Gene
ENSGALG00000000779 | MYH13
Description
myosin, heavy chain 13, skeletal muscle [Source:HGNC Symbol;Acc:HGNC:7571]
Coordinates
chr18:298255-301365:-
Coord C1 exon
chr18:301240-301365
Coord A exon
chr18:299935-300105
Coord C2 exon
chr18:298255-298359
Length
171 bp
Sequences
Splice sites
3' ss Seq
TAACTCTGCACTACAACCAGGCA
3' ss Score
4.05
5' ss Seq
AGGGTATGG
5' ss Score
7
Exon sequences
Seq C1 exon
AACACAAGCCTCCTGAACACCAAGAAGAAACTGGAAGTGGACATTACTCATTTACAAAATGAAGTTGAAGATAGCATTCAGGAAGCCAGAAATGCAGAGGAAAAGGCAAAGAAAGCAATCACAGAT
Seq A exon
GCAGCCATGATGGCAGAAGAGCTGAAGAAGGAGCAGGACACCAGTGCTCACTTGGAGAGGATGAAGAGGAATCTGGAACAAATGGTGAAGGACCTGCAGCACCGTCTGGATGAAGCTGAGCAGCTGGCACTGAAGGGTGGAAAGAAGCAACTCCAGAAACTAGAGGCCAGG
Seq C2 exon
ATTCATGAGTTAGAAAATGAGCTTGACATTGAGCAGAAGCGAGGAACAGAGTCACTGAAAGGTGCTCGCAAGTATGAACGAAGGCTGAAGGAGCTCACTTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000779-'35-36,'35-35,36-36
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACACAAGCCTCCTGAACACC
R:
CTGGTAAGTGAGCTCCTTCAG
Band lengths:
231-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]