GgaEX7009409 @ galGal4
Exon Skipping
Gene
ENSGALG00000000779 | MYH13
Description
myosin, heavy chain 13, skeletal muscle [Source:HGNC Symbol;Acc:HGNC:7571]
Coordinates
chr18:299935-301646:-
Coord C1 exon
chr18:301443-301646
Coord A exon
chr18:301240-301365
Coord C2 exon
chr18:299935-300105
Length
126 bp
Sequences
Splice sites
3' ss Seq
TCCTTGGACTGTCCCAACAGAAC
3' ss Score
7.99
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
GATTCCCAGCTCCATTTGGATGATGCTTTGAGAGAGAATGATGATCTGAAGGAGCAGCTTGCTGTGATAGAGCGTAGGAATAATCTGATGATGACAGAACTTGAGCAGATGCGAGCTGCCCTTGAGCAAACAGAGCGAGCCCGCAAAGTTTCTGAGCAGGAGCTGACAGATGCCAGTGAGCGAGTGCAGATTCTCCATTCTCAG
Seq A exon
AACACAAGCCTCCTGAACACCAAGAAGAAACTGGAAGTGGACATTACTCATTTACAAAATGAAGTTGAAGATAGCATTCAGGAAGCCAGAAATGCAGAGGAAAAGGCAAAGAAAGCAATCACAGAT
Seq C2 exon
GCAGCCATGATGGCAGAAGAGCTGAAGAAGGAGCAGGACACCAGTGCTCACTTGGAGAGGATGAAGAGGAATCTGGAACAAATGGTGAAGGACCTGCAGCACCGTCTGGATGAAGCTGAGCAGCTGGCACTGAAGGGTGGAAAGAAGCAACTCCAGAAACTAGAGGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000779-'34-35,'34-34,35-35=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCTCCATTTGGATGATGCT
R:
TGGTGTCCTGCTCCTTCTTCA
Band lengths:
242-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]