BtaEX6087151 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000025337 | MYH13
Description
myosin, heavy chain 13, skeletal muscle [Source:HGNC Symbol;Acc:HGNC:7571]
Coordinates
chr19:29960666-29963419:-
Coord C1 exon
chr19:29963216-29963419
Coord A exon
chr19:29961092-29961217
Coord C2 exon
chr19:29960666-29960836
Length
126 bp
Sequences
Splice sites
3' ss Seq
GTATCTAATTTTTCTTGTAGAAC
3' ss Score
8.02
5' ss Seq
GACGTGAGC
5' ss Score
5.28
Exon sequences
Seq C1 exon
GACTCCCAGCTACACCTGGATGATGCCCTGAGGAGCAACGAGGATCTCAAGGAGCAGCTGGCCATGGTGGAGCGCAGGAACGGCCTCTTGCAGGAGGAGCTGGAGGAGATGAAGGTGGCCTTGGAGCAGACGGAGCGGACCCGCAAGCTGTCGGAGCAGGAGCTGCTGGATGCCAGTGACCGCATGCAGCTTCTTCACTCCCAG
Seq A exon
AACACGAGCCTGATAAATACCAAGAAAAAACTGGAAGCTGACATAGCCCAATGCCAGGCAGAGGTGGAGAACTCTATCCAGGAGTCCAAAAATGCGGAGGAGAAGGCCAAGAAAGCCATCACAGAC
Seq C2 exon
GCGGCCATGATGGCCGAGGAGCTGAAGAAGGAGCAGGACACCAGCGCCCACCTGGAGCGGATGATGAAGAACCTGGAGCAGACGGTGAAGGACCTGCAGCACCGCCTGGATGAGGCTGAGCAGCTGGCCCTGAAGGGCGGGAAGAAGCAGATCCACAAGCTGGAGAATCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025337-'32-33,'32-32,33-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.824 A=0.833 C2=0.912
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(7.8=100)
A:
PF0157614=Myosin_tail_1=FE(4.8=100)
C2:
PF0157614=Myosin_tail_1=FE(6.5=100),PF0026115=Tropomyosin=PU(26.6=71.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGATGCCCTGAGGAGCAAC
R:
TCTTCATCATCCGCTCCAGGT
Band lengths:
256-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]