MmuEX6086290 @ mm10
Exon Skipping
Gene
ENSMUSG00000060180 | Myh13
Description
myosin, heavy polypeptide 13, skeletal muscle [Source:MGI Symbol;Acc:MGI:1339967]
Coordinates
chr11:67364852-67367727:+
Coord C1 exon
chr11:67364852-67365055
Coord A exon
chr11:67367153-67367278
Coord C2 exon
chr11:67367557-67367727
Length
126 bp
Sequences
Splice sites
3' ss Seq
AGATCTAATTTTTCTCGTAGAAC
3' ss Score
5.91
5' ss Seq
GACGTAAGC
5' ss Score
7.1
Exon sequences
Seq C1 exon
GATTCCCAGCTGCACCTGGACGATGCCCAGAGAAGTAACGAGGACCTCAAGGAGCAGCTAGCCATTGTGGAGCGCAGGAATGGCCTCCTGCAGGAGGAGCTGGAGGAAATGAAGGTGGCCCTGGAGCAGACAGAGCGGACCCGCAGGCTGTCAGAGCAGGAGCTGCTGGACTCCAGTGACCGTGTCCAGCTGCTCCATTCCCAG
Seq A exon
AACACGAGCCTGATAAATACCAAGAAAAAACTAGAGGCCGACTTGGCTCAATGCCAGGCAGAAGTGGAGAACTCCATCCAGGAGTCCAGAAACGCAGAAGAGAAGGCCAAGAAGGCCATCACTGAC
Seq C2 exon
GCCGCCATGATGGCGGAGGAGCTGAAGAAGGAGCAGGACACCAGCGCCCACCTGGAGAGGATGAAGAAGAACCTGGAGCAGACGGTGAAGGACCTGCAGCACCGTCTGGATGAGGCTGAGCAGCTGGCGCTGAAGGGCGGCAAGAAGCAGATCCAGAAACTGGAGGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060180-'35-40,'35-39,43-40=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.650 A=0.740 C2=0.751
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(7.8=100)
A:
PF0157614=Myosin_tail_1=FE(20.2=100)
C2:
PF0157614=Myosin_tail_1=FE(27.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAATGAAGGTGGCCCTGGAG
R:
TTCTGGATCTGCTTCTTGCCG
Band lengths:
257-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types