DreEX6023495 @ danRer10
Exon Skipping
Gene
ENSDARG00000001993 | myhb
Description
myosin, heavy chain b [Source:ZFIN;Acc:ZDB-GENE-081124-1]
Coordinates
chr6:40748958-40749623:-
Coord C1 exon
chr6:40749420-40749623
Coord A exon
chr6:40749209-40749334
Coord C2 exon
chr6:40748958-40749128
Length
126 bp
Sequences
Splice sites
3' ss Seq
CTTGATCTCAATGTCCGCAGAAC
3' ss Score
7.97
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
GATGCTCAACTCCATCTTGATGAGGCTCTGAGGGCTCAAGAGGACATGAAAGAACAAGTTGCAATGGTTGAACGCAGGAATAACCTGATGCAGGCAGAGATCGAGGAGCTGAGAGTTGCTCTGGAGCAGACCGAGAGAGGCCGCAAAGTGGCTGAGCAGGAACTGGTGGATGCCAGTGAGCGAGTGACTCTCTTACACTCCCAA
Seq A exon
AACACCAGTCTTATTAACACCAAGAAAAAGCTGGAAGCAGATCTTGTTCAGATTCAAGGTGAGATGGAGGACGTGGTCCAGGAAGCTCGAAATGCTGAAGAGAAGGCAAAGAAAGCTATAACTGAT
Seq C2 exon
GCCGCCATGATGGCAGAGGAGCTGAAGAAGGAGCAGGACACAAGCGCTCACCTTGAGAGGATGAAGAAGAATCTGGAGGTTACAGTCAAAGACCTGCAGCACCGTCTGGATGAGGCTGAGAGTCTGGCTATGAAGGGTGGAAAGAAGCAGCTCCAGAAGCTGGAGGCCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001993-'36-37,'36-36,37-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.574 A=0.500 C2=0.702
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(7.8=100)
A:
PF0157614=Myosin_tail_1=FE(4.8=100)
C2:
PF0157614=Myosin_tail_1=FE(6.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGAGGAGCTGAGAGTTGCT
R:
GCTGCTTCTTTCCACCCTTCA
Band lengths:
256-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]