HsaEX6020990 @ hg38
Exon Skipping
Gene
ENSG00000006788 | MYH13
Description
myosin heavy chain 13 [Source:HGNC Symbol;Acc:HGNC:7571]
Coordinates
chr17:10303394-10307064:-
Coord C1 exon
chr17:10306939-10307064
Coord A exon
chr17:10306459-10306629
Coord C2 exon
chr17:10303394-10303498
Length
171 bp
Sequences
Splice sites
3' ss Seq
TGTCCTGTGAACTTAACCAGGCT
3' ss Score
4.53
5' ss Seq
CGGGTAGAG
5' ss Score
2.04
Exon sequences
Seq C1 exon
AACACAAGCCTGATAAATACCAAGAAAAAACTGGAGGCTGACATAGCTCAGTGCCAGGCAGAGGTGGAGAACTCGATCCAGGAGTCCAGGAACGCAGAGGAGAAGGCCAAGAAGGCCATCACGGAT
Seq A exon
GCTGCCATGATGGCTGAGGAGCTAAAGAAGGAACAGGACACCAGCGCCCACCTGGAGCGGATGAAGAAGAACCTGGAGCAGACGGTGAAGGACCTGCAGCACCGTCTAGATGAGGCTGAACAACTGGCGCTGAAGGGCGGGAAGAAGCAGATCCAGAAACTGGAGAACCGG
Seq C2 exon
GTGCGGGAGCTGGAAAATGAGCTTGATGTGGAACAGAAGAGGGGAGCTGAAGCCCTGAAGGGAGCCCACAAGTACGAACGCAAAGTCAAGGAGATGACTTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000006788-'41-39,'41-38,42-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.595 A=0.789 C2=0.886
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.8=100)
A:
PF0157614=Myosin_tail_1=FE(6.5=100)
C2:
PF0157614=Myosin_tail_1=FE(4.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACAAGCCTGATAAATACCAAGA
R:
TCTCCTTGACTTTGCGTTCGT
Band lengths:
219-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains