HsaEX6020990 @ hg19
Exon Skipping
Gene
ENSG00000006788 | MYH13
Description
myosin, heavy chain 13, skeletal muscle [Source:HGNC Symbol;Acc:7571]
Coordinates
chr17:10206711-10210381:-
Coord C1 exon
chr17:10210256-10210381
Coord A exon
chr17:10209776-10209946
Coord C2 exon
chr17:10206711-10206815
Length
171 bp
Sequences
Splice sites
3' ss Seq
TGTCCTGTGAACTTAACCAGGCT
3' ss Score
4.53
5' ss Seq
CGGGTAGAG
5' ss Score
2.04
Exon sequences
Seq C1 exon
AACACAAGCCTGATAAATACCAAGAAAAAACTGGAGGCTGACATAGCTCAGTGCCAGGCAGAGGTGGAGAACTCGATCCAGGAGTCCAGGAACGCAGAGGAGAAGGCCAAGAAGGCCATCACGGAT
Seq A exon
GCTGCCATGATGGCTGAGGAGCTAAAGAAGGAACAGGACACCAGCGCCCACCTGGAGCGGATGAAGAAGAACCTGGAGCAGACGGTGAAGGACCTGCAGCACCGTCTAGATGAGGCTGAACAACTGGCGCTGAAGGGCGGGAAGAAGCAGATCCAGAAACTGGAGAACCGG
Seq C2 exon
GTGCGGGAGCTGGAAAATGAGCTTGATGTGGAACAGAAGAGGGGAGCTGAAGCCCTGAAGGGAGCCCACAAGTACGAACGCAAAGTCAAGGAGATGACTTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000006788-'37-38,'37-37,38-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.595 A=0.789 C2=0.886
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.8=100)
A:
PF0157614=Myosin_tail_1=FE(6.5=100)
C2:
PF0157614=Myosin_tail_1=FE(4.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACAAGCCTGATAAATACCAAGA
R:
TCTCCTTGACTTTGCGTTCGT
Band lengths:
219-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)