DreEX0048688 @ danRer10
Exon Skipping
Gene
ENSDARG00000010186 | myo3a
Description
myosin IIIA [Source:ZFIN;Acc:ZDB-GENE-041026-4]
Coordinates
chr24:6155794-6163092:-
Coord C1 exon
chr24:6163016-6163092
Coord A exon
chr24:6160983-6161024
Coord C2 exon
chr24:6155794-6155874
Length
42 bp
Sequences
Splice sites
3' ss Seq
ATAATGACTTCTGTCTAAAGTTG
3' ss Score
3.74
5' ss Seq
GAGGTAATG
5' ss Score
8.73
Exon sequences
Seq C1 exon
GTAATTTGGCGCACACTAAGGGCAAAGCTGTGGGCTCTGCTCGGATGGGCACACAACAATCACAGCGCTTTGCCAAG
Seq A exon
TTGGATTGCCTTTTGTTGTTCAGTTCTGTATCATTCAGTGAG
Seq C2 exon
ACGGAGAGCACTGGAGACACCACACATCACCCCAGGGAGACCACCAACATGAAGACTCAAACTGTAGCGTCGTACTTCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010186_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.000 C2=0.630
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.4=100)
A:
PF0006316=Myosin_head=FE(1.8=100)
C2:
PF0006316=Myosin_head=FE(3.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTAAGGGCAAAGCTGTGG
R:
ACGACGCTACAGTTTGAGTCT
Band lengths:
138-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]