DreINT0100778 @ danRer10
Intron Retention
Gene
ENSDARG00000010186 | myo3a
Description
myosin IIIA [Source:ZFIN;Acc:ZDB-GENE-041026-4]
Coordinates
chr24:6155794-6156121:-
Coord C1 exon
chr24:6156050-6156121
Coord A exon
chr24:6155875-6156049
Coord C2 exon
chr24:6155794-6155874
Length
175 bp
Sequences
Splice sites
5' ss Seq
ACGGTGATT
5' ss Score
4.54
3' ss Seq
AATATGTTGTGTTTGCGCAGACG
3' ss Score
7.15
Exon sequences
Seq C1 exon
TCTTCCTCTCGGAAATTAACTCCACCCATTGACAAATCAATGCTTGCCTTGCCTGTTGACTCTGTACAAACG
Seq A exon
GTGATTGTGTGTTTAGCCTGACCTTTGGCTTTCTTGTATACATTTTCTCCCACGTGAAAACATATAACAGTTTAATATAAACACATTATTTTATCTCTACATAAAAAGACCCTCATTTTGCTTTTTGCGGTCCTTCACATCTGTAATGCTCACAGAATATGTTGTGTTTGCGCAG
Seq C2 exon
ACGGAGAGCACTGGAGACACCACACATCACCCCAGGGAGACCACCAACATGAAGACTCAAACTGTAGCGTCGTACTTCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010186:ENSDART00000136041:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=NA C2=0.630
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.1=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTCGGAAATTAACTCCACCC
R:
TCTGAAGTACGACGCTACAGT
Band lengths:
149-324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]