HsaINT0108697 @ hg19
Intron Retention
Gene
ENSG00000095777 | MYO3A
Description
myosin IIIA [Source:HGNC Symbol;Acc:7601]
Coordinates
chr10:26442779-26443752:+
Coord C1 exon
chr10:26442779-26442858
Coord A exon
chr10:26442859-26443674
Coord C2 exon
chr10:26443675-26443752
Length
816 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
GTCTTCCTTGGTCTCCTTAGGGC
3' ss Score
10.23
Exon sequences
Seq C1 exon
GTAATCTGCCACATTCTAAAACTAAAAATGTTATAAACTATCAAATGAGGACTTCAGAAAAATTAATCAACCTGGCAAAG
Seq A exon
GTAAGAAAATGCTTTTTTTCTTGGCAGTGAGTCTAAGAATCTAACCGGTATGATGGCAATATTTGTATGCTTCTCAAAGTCAACAGTTTTTTTCTTAGTTTTTCTCCCTTTGATCTTGCTTTTCTGTTTGAACAGATATTTATGTTATGTTCTTGTTACTGCTAGGGGCTAAAATAATCATGCATTTCTGATATATTAATATTTCCAACTCTTCTTTTTTAGCTAGTTTTTGGGGGGCAGTTTTTGTTTTTGTTTGTTTGTTTGTTTTTGAGACTGGAGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGCATGATCTCAGCTCACTGCAACCTCTGCCTCCCAGGCTCAAGTGATTCTCCTGCCTCAGCCTCCTGATTAGCTGGGATTACAGGTACCCACCCACACCCAGCTAATTTTTCTATTTTTAGTAGAGACAGGATTTCACCATGTTGGCCAGGCTGGTCTTGAAGTCCTGACCTCAAATGAGCAGCCTGCCTCGGCCTCCCAAAGTGCTGGCATTACAGGCATGAGCCACCATGCCTAGCCCTTTTTTAGCTAGTTTTAAATGTTACACTAAGACCAACTAAAAATGTACTAGTGAAGATGAGAGATATTCACAGTCTACATAAGACCAATTAAAATTCCAATGAGACTGACAAAACAATTACCTAAAGGAAGAATATCAACATTTTGCTGTTTTACATATTTGAATGCATAAACTAAGATAGCCTGAAGGAAAATGCCACATGCTGTCTGTAGATAATAAAGTACAATAGATACCAAGGCATCACTGTCTTCCTTGGTCTCCTTAG
Seq C2 exon
GGCGACACTGGAGAAGCCACACGTCATGCCAGAGAGACAACCAACATGAAAACACAAACGGTTGCATCATATTTTAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095777-MYO3A:NM_017433:24
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.296 A=NA C2=0.346
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)